Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4346 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCTGTGCACAAGCTTGAGAAGGAGTCTGGGTTTTTCTTCAACATGAAGTACTTCGAGGAAAAAGTCCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTAACAGGCTTTACTAAAGTTGATGATAATCGATACTCCATGAAGATTTTCTTTGAAATCAGAAAACAAAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATACTAGTAAATGATTTAAAAGTGTTCTCCACTTTCAATGAGGACCTATATAAAGAAATTACCCAGCTGTTAACACTTAATAATTTCAGGGAGAATGATCAGCTGGCCAAGTATGGTGACACTAAAACAGCTCGAAGCATTATGTTGATAGAGCTGAAAAAATTGATAGAAGCAAATCCTCTATTTCGTGATAAGCTTCTCTTCCCTACTCTTAAATCATCGAGATTGAGGACGTTAATCAATCAAAGTTTGAACTGGCAGCATCAGCTTTGCAAAAATCCAAGACCAAACCCAGATATTAAGACTTTATTTACAGATCACACATGTTCACCTCCTAATGGTCCTCTAACACCTACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTGTTTATACATCACTTGCTGCTCATGGTTCCTTCCCACCTGCTGCAGCTTCTGCTAATTCTATAGCTGGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACTGCATCATCCATGCCTGTTCCTCAGAATCAAGTGCCCATCTTGAAACGTCCAAGAACACCTCCGGCAGCCCCTGGCATGGTTGATTATCAGAATTCTGATAATGAGCAGTTAATGAAAAGGCTTCGGCCAGTTCATTCTGTGGAGGAGGTTTGCTATCCTACAGCTCGACAAGCTTCTTGGTCACTGGATGATCTGCCAAGAACAGTGGCTATGACACTGCATCAAGGATCCTCTGTTAACAGCATGGACTTTCATCCTTCACACCAGACGTTACTTCTTGTTGGATCTACTAATGGTGAAATTGCCCTATGGGAACTTGGGTTGCGGGAGAGGTTGGTTTCAAAGCCATTCAAGATATGGGATCTATCAGCATGCACATTGGCATTTCAGGCAGCTGTTGTCAAAGATGCACCAATTTCTGTCAGCCGTGTTATGTGGAGCCCAGATGGAAATTTTGTTGGTGTTGCATTTAGCAAACATTTGGTTCACTTGTATGCCTATACTGGATCAAATGAGCTGAGCCAACGATTGGAGATTGATGCCCATACTGGTGGCGTGAATGATTTGGCATTTGCTCATCCAAATAAACAACTATGTATTCTGACCTGTGGTGATGATAAGATGATAAAGGCGTGGGAGTTAAATGGACGAAAACTATTCACCTTTGAAGGGCATGAAGCACCTGTCTATTCCATCTGTCCTCATCACAAAGAAAACATTCAGTTTATATTTTCAACTGCTGTTGATGGAAAAATAAAGGCCTGGTTGTATGATAACATGGGTTCCAGAGTTGATTATGATGCTCCAGGTCACTGCTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGAACAAGTAAAAATGGAGAATCTTTCCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACATATCATGGGTTCAGAAAGAAATCAAATGGTGTTGTGCAGTTTGACACAACGCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGCCAAATAAAGTTCTGGGATATGGACAATGTTAATCTTCTGACAAGCACTGATGCAGAGGGTGGACTACAGAGCCTTCCACGTTTGAGATTTAATAAGGAAGGAAATCTTCTTGCTGTTACTACTGCGGACAATGGATTCAAGGTACTTGCAAATGCTGTTGGTCTGAGATCCTTAAGGGCAATGGAAACTCCAGCGTTTGAAGCATTGAGGTCTCCCATAGAATCAGCTGCAAATAAGAATGGAGTTGACCCTATGGGTCTAAGTTTGGAGAAACCTAGAACCATGGAAGATGTGATAGATAGAACTAAACCTTGGCAGCTGTCTGAAATTTTGGATTCTATCCAATGCCGGCTAATTACAATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGGCTTTTATATACAAATTCTGGTGCTGGAGTTTTGGCACTTGGGTCAAATGGTATTCAGAAACTGTGGAAGTGGACTCGTAATGAACAGAATCCTTCTGGGAAGGCCACTGCCAGCGTTGTTCCACAACACTGGCAACCCAACAGTGGTCTTCTTATGACCAACGATATTTCTGGTGTCAACCTTGAAGATGCAGTTCCCTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCTTGCGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACGTTCATGCCACCACCTCCGGCCTCTACTTTTCTGTCTTTCCACCCCCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACGATTCACATTTATAATGTTAGAGTGGATGAGGTCAAATCGAAATTGAAGGGTCACCAGAAGCGTATTACTGGTTTAGCCTTTTCAACCAATCTTAACATACTGGTCTCATCTGGTGCTGATGCCCAACTTTGTGTGTGGAGCATTGATACTTGGGAGAAAAGAAAATCAATGACAATACAACTACCTGCGGGAAAGTCTCCTGTTGGTGATACCAGAGTCCAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGAATCATTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGACAGTGGCTCCCACAAGATATTCTGCCTGCTCCTATATCATATGCAACTTATTCAAGCAACAGTGCGTTAATATATGCTACTTTTTTGGATGGTAACATTGGGGTCTTTGATGCTGATAGCTTGAGGCTGAGATGTCGTATTGCTCCATCAGCGTACTTATCACCGGCAGCTTTAAGTGGAAGCCAAGCTGTGTCCCCGCTCGTGGTTGCAGCTCATCCGCAAGAGCCCAACCAATTCGCTGTGGGGTTCACTGATGGATCCGTTAAAGTAATAGAGCCCTCTGAATCAGAGGGAAAATGGGGATCTACTCCGCCTGTAGATAATGGAGTGCTAAACGTTAGGCAAGGACAATCGTCTACTTCAAATATCCACCACACTCCTGATCAGGCACAGAGATAA 3303 0.4269 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVNDLKVFSTFNEDLYKEITQLLTLNNFRENDQLAKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLTPTPVNLPVAAVAKPAVYTSLAAHGSFPPAAASANSIAGWMANASASSSVQAAVVTASSMPVPQNQVPILKRPRTPPAAPGMVDYQNSDNEQLMKRLRPVHSVEEVCYPTARQASWSLDDLPRTVAMTLHQGSSVNSMDFHPSHQTLLLVGSTNGEIALWELGLRERLVSKPFKIWDLSACTLAFQAAVVKDAPISVSRVMWSPDGNFVGVAFSKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCILTCGDDKMIKAWELNGRKLFTFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHCCTTMLYSADGSRLFSCGTSKNGESFLVEWNESEGAIKRTYHGFRKKSNGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLLTSTDAEGGLQSLPRLRFNKEGNLLAVTTADNGFKVLANAVGLRSLRAMETPAFEALRSPIESAANKNGVDPMGLSLEKPRTMEDVIDRTKPWQLSEILDSIQCRLITMPESADASSKVVRLLYTNSGAGVLALGSNGIQKLWKWTRNEQNPSGKATASVVPQHWQPNSGLLMTNDISGVNLEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLSFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSMTIQLPAGKSPVGDTRVQFHSDQLRLLVVHENHLAIYDASKMDRIRQWLPQDILPAPISYATYSSNSALIYATFLDGNIGVFDADSLRLRCRIAPSAYLSPAALSGSQAVSPLVVAAHPQEPNQFAVGFTDGSVKVIEPSESEGKWGSTPPVDNGVLNVRQGQSSTSNIHHTPDQAQR 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4346 1100 MobiDBLite consensus disorder prediction 1062 1100 - -
Prci1g4346 1100 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 381 IPR001680 GO:0005515
Prci1g4346 1100 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Prci1g4346 1100 SMART WD40_4 792 828 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 482 523 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 969 1005 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 333 372 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 831 871 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 1019 1060 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 572 612 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 874 913 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 394 433 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 437 480 IPR001680 GO:0005515
Prci1g4346 1100 SMART WD40_4 526 569 IPR001680 GO:0005515
Prci1g4346 1100 Gene3D - 323 383 IPR015943 GO:0005515
Prci1g4346 1100 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 881 916 - -
Prci1g4346 1100 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1080 IPR027728 GO:0006355
Prci1g4346 1100 MobiDBLite consensus disorder prediction 1076 1100 - -
Prci1g4346 1100 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Prci1g4346 1100 SUPERFAMILY WD40 repeat-like 798 1062 IPR036322 GO:0005515
Prci1g4346 1100 SUPERFAMILY WD40 repeat-like 327 653 IPR036322 GO:0005515
Prci1g4346 1100 Gene3D - 795 1068 IPR015943 GO:0005515
Prci1g4346 1100 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Prci1g4346 1100 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 621 IPR001680 GO:0005515
Prci1g4346 1100 FunFam Topless-related protein 3 700 934 - -
Prci1g4346 1100 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 922 IPR001680 GO:0005515
Prci1g4346 1100 SMART ctlh 34 92 IPR006595 -
Prci1g4346 1100 SMART Lish 4 36 IPR006594 GO:0005515
Prci1g4346 1100 Gene3D - 406 663 IPR015943 GO:0005515
Prci1g4346 1100 Pfam WD domain, G-beta repeat 446 479 IPR001680 GO:0005515
Prci1g4346 1100 Pfam WD domain, G-beta repeat 880 913 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4346 Prci-Chr1 57661667 57671887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4346 445 653 Miscellaneous Gene Families AT5G08390 25.822 6.15e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4346 - - gmx:100793575 1953.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4346 1 57661667 57671887 Prci1g4346 1 57661667 57671887 ECH