Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4278 ATGGGGACTGAAAATCCGGGACGTTCAAGTTTTCCAGCTAGGCCTGCCACAACGCCTTTTGCTCCTCCTCAGACCATGACACCGTTTTCATCAACTGGTCCTGTGGTTGGATCTGAGCCTCCTTTTCCCCGGCCTACTCCTTCTGCTATTCCCCAACCTTCAGTGCCATTGTCATCAGCCGGACCTACAGTCACACCAGGGGCATCCAATTTTAGACCTATCCCTCCTGGCAGGTTTAATGATCCATCTGTGCCTCCGCCTCCAACGTACAGCGTTCCACCTGCTGGTGGTCCTTTCCAGCGTTTTCCTACTCCACAGTTTACCTCAACAGCTCAAGCTCCTGCACCTGTTCAATCCATAGGACGACCGTCGATGCCGCCTTCTGTAAATCAAGCACCATCTTTTCCAGCGGCCCTTCAACCACAGACACCAATTGTCCCGATGGGTTCTCCCCCACAAAGTGCTACTCCTTCACCTTTAAAGCCTAATGTTCCTCCTTTGTCAGATTCATCATTTCCAGGGTCTAGGCCTAATGTTCAGCCATCTTTTCCTGGATACATCCGCAAGCAGACCAGCACTGAAATGCAAGGTCCGCCTATGCATCCATCTTTTCCCGCTAATCAAGGTAATTATGCACCGGCTCCACCTGCTCTATCTCATCAAGGGAGCTATGTTCCACCACCTCCTGTGGCTGCTCCGTTAGGCATGCAGCAGATGCAACAGCAAGGATATGGACCTTCTGTTGGTGCCATTCAGGGCCTGACAGAAGACTTCAGTTCACTTTCTATTCAAACTCGTCCTGGTTCAATGGATCAAGTTGTTGATGCTAAAGAACTGCCAAGACCACTGGATGGTGATGTGGAGCCAACATCTCTGGCTGACCTTTTCCCCATGAACTGCAACCCCAGATATCTACGGCTAACAACCAGTGCGATTCCCAGCTCCCAGTCCTTAGCTTCAAGATGGCATCTGCCTCTTGGAGCAGTTGTTTGTCCACTTGCAGAAGCTCCTGATGGGGAAGAGGTGCCTATAATCAATTTTGCCCCAACTAGTGTCATACGGTGTAGAAGATGTCGCACTTATGTGAATCCATATGTGACATTCACAGATGCTGGAAGAAAATTTCGGTGCAATGTTTGCACTTTGCTGAATGATGTGCCTAGTGAATATTTTGCTCAATTAGATGCCACTGGTAGAAGAGTTGATTTGGATCAAAGACCTGAGCTTACAAAGGGTACTGTGGAATTTGTTGCCCCTGCTGAATATATGGTGCGACCTCCTATGCCCCCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGTGGCCCAAACAATCAAGTCGTGTCTAGATGAGTTGCCTGGCTCTCCACGAACTCAAATAGGTTTTGCAACATTTGACAGCACAATTCATTTTTATAATATGAAGTCGTCCTTGACTCAACCACAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTTCCAGACGATCTCCTTGTTAATTTATCAGAATCCAGAAGTGTGGTGGAGACCTTCCTTGACAGTTTGCCATGCATGTTCCAGAACAATATAAATATTGAATCAGCCTTTGGTCCGGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTCCAAAATGCACTGCCATCTCTTGGTGTTGGACGCTTAAAATTACGTGGAGATGATGCTCGTGCTTATGGGACTGATAAAGAACACATGTTAAGGCTGCCAGAAGATCCATTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATACCAGATCTGTGCTAACGTGTACGCATTTAGTGACAAGTACACTGACATTGCATCCTTAGGAACTTTGGCAAAGTACACTGCAGGTCAAGTATATTACTATCCGGCTTTCCAATCAACTATTCATGGGGAGAAATTGAGGCATGAGTTAAGGAGAGACCTAACCAGAGAAACTGCCTGGGAAGCTGTACTGCGCATTAGATGTGGAAAAGGTGTTCGCTTCACAACTTTTCACGGGAACTTCATGCTAAGATCTACTGATTTGTTAGCACTTCCGGCTGTAGATTGTGATAAAGCTTTTGCCATGCAATTATCTCTTGAAGAGACGTTGCTGACAACTCAGACTATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGGGAAAGACGGATCAGAATACACACTGCTGCAGCTCCAGTAGTCACTGACTTGGGAGAGATGTATCGCCTGGCTGATACTGGTGCCATAGTTTCTCTACTTAGTAGACTAGTAATTGAGAAAACATTGTCTAATAAACTGGAAGATGCAAGGAGTGCTGTACAGCTAAGAATTGTCAAGGCCCTCAGAGAATATCGAAATCTATATGCTGTGCAACATCGCTTGGCTAACAGGATGATATATCCTGAGTCTCTAAAATTCCTACCATTGTATGGCTTAGCACTTTGTAAATCAACACCCCTCCGTGGAGGGCATGCTGATGCTCCCCTGGATGAACGGTGTGCAGCAGGATACACAATGATGGCTCTACCAATAAAAAGGCTGTTGAAATTTCTATATCCAAGCTTGATTCGACTTGATGAATACTTGTTGAAGGCATCTGTGCAGTCTGATGAGTTAAAAAACATTGAGAAAAGGCTACCATTGACTGGTGAGAGCATGGATTCTAGAGGCCTTTATGTATACGATGATGGCTTCCGGTTCATTATATGGTTTGGTAGAGTGCTTTTACCTGATATGGCTAAGAAGTTGCTTGGGGCAGACTTTGCTGCAGAATTATCAAAGGTTACCCTTAAGGAGCATGATAATGAGATGTCAAGGAAGCTAATCAGGATACTTGAGAAACTGAGAAATACTGATCATTCTTATTATCAGTTGTGCTATCTTGTGAGGCAAGGCGAGCAGCCCAGAGAGGGATTCCTTATCCTTGCAAATCTTGTTGAGGACCAAATGGGTGGTAACAGTGGTTATGCTGATTGGATGCTTCAGCTATCCCGACAGGTGCAGCAATAA 3066 0.4517 MGTENPGRSSFPARPATTPFAPPQTMTPFSSTGPVVGSEPPFPRPTPSAIPQPSVPLSSAGPTVTPGASNFRPIPPGRFNDPSVPPPPTYSVPPAGGPFQRFPTPQFTSTAQAPAPVQSIGRPSMPPSVNQAPSFPAALQPQTPIVPMGSPPQSATPSPLKPNVPPLSDSSFPGSRPNVQPSFPGYIRKQTSTEMQGPPMHPSFPANQGNYAPAPPALSHQGSYVPPPPVAAPLGMQQMQQQGYGPSVGAIQGLTEDFSSLSIQTRPGSMDQVVDAKELPRPLDGDVEPTSLADLFPMNCNPRYLRLTTSAIPSSQSLASRWHLPLGAVVCPLAEAPDGEEVPIINFAPTSVIRCRRCRTYVNPYVTFTDAGRKFRCNVCTLLNDVPSEYFAQLDATGRRVDLDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGSPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPCMFQNNINIESAFGPALKAAFMVMSQLGGKLLIFQNALPSLGVGRLKLRGDDARAYGTDKEHMLRLPEDPFYKQMAAEFSKYQICANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSTIHGEKLRHELRRDLTRETAWEAVLRIRCGKGVRFTTFHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRIHTAAAPVVTDLGEMYRLADTGAIVSLLSRLVIEKTLSNKLEDARSAVQLRIVKALREYRNLYAVQHRLANRMIYPESLKFLPLYGLALCKSTPLRGGHADAPLDERCAAGYTMMALPIKRLLKFLYPSLIRLDEYLLKASVQSDELKNIEKRLPLTGESMDSRGLYVYDDGFRFIIWFGRVLLPDMAKKLLGADFAAELSKVTLKEHDNEMSRKLIRILEKLRNTDHSYYQLCYLVRQGEQPREGFLILANLVEDQMGGNSGYADWMLQLSRQVQQ 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4278 1021 Coils Coil 877 897 - -
Prci1g4278 1021 MobiDBLite consensus disorder prediction 168 198 - -
Prci1g4278 1021 Pfam Sec23/Sec24 trunk domain 427 663 IPR006896 GO:0006886|GO:0006888|GO:0030127
Prci1g4278 1021 Gene3D Severin 872 1000 IPR029006 -
Prci1g4278 1021 MobiDBLite consensus disorder prediction 1 241 - -
Prci1g4278 1021 SUPERFAMILY Helical domain of Sec23/24 764 871 IPR036175 GO:0006886|GO:0006888|GO:0030127
Prci1g4278 1021 CDD Sec24-like 427 668 IPR041742 GO:0006886|GO:0006888|GO:0030127
Prci1g4278 1021 MobiDBLite consensus disorder prediction 78 100 - -
Prci1g4278 1021 Pfam Sec23/Sec24 zinc finger 353 390 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Prci1g4278 1021 Pfam Sec23/Sec24 helical domain 764 867 IPR006900 GO:0006886|GO:0006888|GO:0030127
Prci1g4278 1021 MobiDBLite consensus disorder prediction 102 138 - -
Prci1g4278 1021 MobiDBLite consensus disorder prediction 38 52 - -
Prci1g4278 1021 SUPERFAMILY beta-sandwich domain of Sec23/24 194 762 - -
Prci1g4278 1021 MobiDBLite consensus disorder prediction 145 166 - -
Prci1g4278 1021 PANTHER SEC24-RELATED PROTEIN 135 1019 - -
Prci1g4278 1021 FunFam protein transport protein Sec24D isoform X1 429 666 - -
Prci1g4278 1021 SUPERFAMILY vWA-like 427 666 IPR036465 -
Prci1g4278 1021 Gene3D Sec23/Sec24 helical domain 753 1019 - -
Prci1g4278 1021 Gene3D - 300 752 - -
Prci1g4278 1021 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 881 1021 IPR036180 -
Prci1g4278 1021 Pfam Sec23/Sec24 beta-sandwich domain 669 752 IPR012990 -
Prci1g4278 1021 Gene3D - 299 411 - -
Prci1g4278 1021 Gene3D von Willebrand factor, type A domain 429 666 IPR036465 -
Prci1g4278 1021 SUPERFAMILY Zn-finger domain of Sec23/24 344 426 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4278 Prci-Chr1 57233489 57243520 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4278 K14007 - gmx:100791083 1617.82