Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4252 ATGAGCTCCAAGCATCTGTGGATAGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGATTTTAAGAACTAGTTTGAAGAAGAGACCTCTTGACCTTCAAAGCATTCGAGCTGCCAGAGCTGCAAGGGAAGCACTGAGACCAGGAAGACCAGTGAAGGATTCATACCAGTATATCAGTAATTCACATGATGAAGATATACTACCTCTGAAAAATTATATGGATGCACAATATTTTGGAGAGATTGGAATAGGCACACCCGCGCAGACCTTCACTGTCATATTTGATACTGGTAGTTCCAACCTTTGGGTTCCTTCATCATGGTGCTATTTCTCAATTGCTTGTTATGTCCATTCTTGGTACAAGTCCAGCAAATCCAGTACATACACTGAGAATGGAACATCATGTGAAATACAATATGGGTCTGGATCATTATCTGGTTTTTTCAGTCAAGATGACGTTAAAGTTGGTGATGTGGTTGTAAAGCATCAAGATTTCATTGAGGCTACTCGAGAGAAAAGTCTTTCCTTTGCATTCGCCAAGTTTGATGGGATACTTGGACTTGGGTTTCAGGAAATCTCAGTTGAGAAAGCAGTACCAGTTTGGTACAATATGGTGGATCAAGATCTTGTTGGCGAGAAGGTGTTCTCTTTTTGGCTCAATGTGGATCCGGAGGCAGAAGAGGGTGGTGAAATTATATTTGGAGGAATTGACCGTAATCATTTCAAAGGAAAACATACTTATGTCCCAATTACTAGAAAAGGTTACTGGCAGATTGAAATAGGAGATTTTCTCATTGGAGGTTTATCAACAGGTGTTTGCGAGGGTGGATGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACCTCGGTCGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTGTGAGTTCAGAATGTAAGGAAATAGTTTCTCAATATGGAGACAGGATATGGGATCTATTAGTATCAGGGGTGGAGCCCGATGAAGTATGTTCACAAATTAGTTTATGCTCTGCATATAGGGATCAATCTAAGAGCAATGGGATCAAAATGGTGACTGAAACAATAGTCAGAGATGTTGTGTCAGCTAGAGATGATAATATGTGCTCTCTGTGTGAGATGGCTGTCGTTTGGATCCAGAATCAACTAAAACGGAAGGTAACCAAGGAAAAAGTAATCCACTACATAAACCAGTTATGTGAAAGACTGCCAAGTCCTGGTGGAGAATCCACGACAAGTTGTGAAAGTATTTCTCAGATGCCGAACATCACAATTACCATCGGAGATAAACCTTTCAGCCTCACTCCACAGCAGTATATTCTGAAAACTGGAGAAGGCGATGCAGCAGTCTGCCTCAGTGGGTTTACAGCTTTTGATATCCCACCTCCTCAGGGCCCTCTCTGGATCCTTGGCGATGTTTTTATGAGGGTATATCATACGGTGTTTGACTACGGCAATCTCCAAGTGGGTTTTGCTGAAGCTGCCTAA 1527 0.4217 MSSKHLWIAFCLWALTCSLLPSFSSGILRTSLKKRPLDLQSIRAARAAREALRPGRPVKDSYQYISNSHDEDILPLKNYMDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSWCYFSIACYVHSWYKSSKSSTYTENGTSCEIQYGSGSLSGFFSQDDVKVGDVVVKHQDFIEATREKSLSFAFAKFDGILGLGFQEISVEKAVPVWYNMVDQDLVGEKVFSFWLNVDPEAEEGGEIIFGGIDRNHFKGKHTYVPITRKGYWQIEIGDFLIGGLSTGVCEGGCAAIVDSGTSLLAGPTSVVAEINHAIGAEGVVSSECKEIVSQYGDRIWDLLVSGVEPDEVCSQISLCSAYRDQSKSNGIKMVTETIVRDVVSARDDNMCSLCEMAVVWIQNQLKRKVTKEKVIHYINQLCERLPSPGGESTTSCESISQMPNITITIGDKPFSLTPQQYILKTGEGDAAVCLSGFTAFDIPPPQGPLWILGDVFMRVYHTVFDYGNLQVGFAEAA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4252 508 ProSiteProfiles Saposin B type domain profile. 378 430 IPR008139 -
Prci1g4252 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 30 506 IPR001461 GO:0004190|GO:0006508
Prci1g4252 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Prci1g4252 508 ProSiteProfiles Saposin B type domain profile. 314 354 IPR008139 -
Prci1g4252 508 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Prci1g4252 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Prci1g4252 508 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Prci1g4252 508 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190|GO:0006508
Prci1g4252 508 Gene3D Acid Proteases 28 242 IPR021109 -
Prci1g4252 508 FunFam Lysosomal aspartic protease 70 312 - -
Prci1g4252 508 Gene3D Acid Proteases 243 508 IPR021109 -
Prci1g4252 508 SUPERFAMILY Saposin 315 417 IPR011001 -
Prci1g4252 508 Pfam Saposin-like type B, region 2 318 350 IPR008138 -
Prci1g4252 508 Gene3D - 314 417 - -
Prci1g4252 508 SMART sapb_4 278 350 IPR008139 -
Prci1g4252 508 Pfam Eukaryotic aspartyl protease 83 507 IPR033121 -
Prci1g4252 508 SUPERFAMILY Acid proteases 8 507 IPR021109 -
Prci1g4252 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629
Prci1g4252 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190|GO:0006508
Prci1g4252 508 ProSiteProfiles Peptidase family A1 domain profile. 84 505 IPR033121 -
Prci1g4252 508 FunFam Lysosomal aspartic protease 355 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4252 Prci-Chr1 57107410 57112179 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4252 K08245 - gmx:100785602 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4252 1 57107410 57112179 Prci1g4252 1 57107410 57112179 ECH