Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4241 ATGAAATTTCTATCCCCTCGAAAATTCAGGAGAAGACAAAGCTGTCCGATTTCTATTTCTATTCCCCTGTTTCACAATCTGTACCGCCAAGCCTCTTCGCCTCTGAACCCCACTCGGCTCAACAGCCTCCTTGACAATGCTGCACAGTATAAAAACCTCAAACACGCAACCCAGATTCACAGCCAAATCATCACCAGCAATTACGCGTCCCACCCATTTATCTTCAACAATCTCTTTCTCTTGTACGCCAAATGTGGTTTCATCGATCGTGGCCTTCTCTTGTTTTCAACCGCCGGTGATGATTCAAGGAACGTTGTCACTTGGACCACCCTTATTACTCAGCTATCACATTTTAAAATGCCATTCCTGGCCTTGAATTATTTTAATCGAATGAGATGCACTGGTATATATCCAAACCAATTCACCTTCTCTGCAGTTTTGCCTGCCTGTGCCGATACAGTGGTTGTTACTTACGGTGAACAGATGCATGGTTTGATTTGGAAACACGGGTTTGAAAGCGATACATTCGTAGCAAGTGCGTTGCTTGATATGTATGCTAAATGCTCGGATGTAAGCATGGCAGAGAAGGTGTTCGATGAAATGCCAAGCAGGAGTATGGTTTCTTGGAATTCTATGATTGTGGGGTTTCTCAAAAACAAGTTGTATGACCGTGCAATCGGGTTTTTTAGAGAGGGTCTCAGGGAGACTGAGGTTGATCCGGATCAAATAAGTTTTTCGAGCGTGTTGAGTGGTTGCGCTCACACGGCTAGATTCGATTTCGGGAAACAAGTGCACGGAAACATTATTAAGCGTGGTTTGATAACAGTGCTTTATGTGAAAAACTCGCTGGTAGACATGTACTCAAAATGTAGGTTGTTTGATGATGCAATGAAGCTGTTCTATAATATCGGAGATAGAGATGTTGTTACCTGGAATGTGATGATCATGGGATGTGTCCATAATGACAACTGTGAAGCAGCCTGCAGTTATTTCCAGGCCATGAGAAGGGAAGGCCTGTCACCCGATGAGGTTTCATACTCTTCCGCTCTTCATGCTTCTGCTAATCTTGCAACATTGACTGAGGGTACTTCGATCCACGCCCAAATCTTAAAAACCGGGTTCACGAAGAATGCATGTATTCTCAGTTCAATGATAACTATGTATGGCAAATGCGGGAACTTGTTTGATGCTTGTCGGGTCTTTGAAGAAACTGAGGATCATAATGTGGTTTCATGGACAGCTATGATAGCAGTTTACCAGCAACACGGCAGTGCAAATGAAGCGATTGAATTATTTGAGAAGATGCTAAAGCATGGAATTGTGCCAGAATATATTACTTTTGTTTCAGTGCTGTCAGCTTGCAGCCATACTGGACAAGTCGAAGTCGGATTCAAGTACTTCAATTCCATGGCTAACATCCATAATATTAAACCCGGACCTGAGCATTATGCTTGCATGGTTGACTTGATTGCCCGTAATGGTCGACTGAATGAAGCAAAGAAATTTATAGAATCAATGCCAATGAAGCCTGACTCATCAATTTGGGGAGCTTTGCTTGGAGCATGCGGAAAGTATGGCAATGTAGAAATGGGCAGCGAGGTCGCAGAGAGGCTTTTTGAGTTGGAACCAAATAACCCAGGAAATTATGTGCTGCTTTCTAATATCTATGCACGACGAGGGATGGTGGAAAAAGCTGACGAAGTTAGGCAATTAATGGGGATTAATAGAGTGAGGAAGGAAACTGGATGTAGTTGGATTGAGTTTAGGAACCAGACCTTTGTATTTACTGTCAATGATAAGTCACATTCAAGGACGGATGAGATTTATGAAATGCTGAAAAAGTTAAAAGAGTTGGCAAAGAAGAGAGGATATGTGGCTGCGATCCAGTTTGCGACCAACAGCGTGGAAGGTTCTGAAGAACAGAGTTTGTGGAGTCACAGTGAAAAGCTAGCTCTAGCATTTGGTCTTCTGGTCCTCCCGAGCGCGTCTTCAATAAGGATAAAGAAAAATCTGAGAACTTGTGGTGATTGTCATACAGTGATGAAGTTTGCCTCAGAGATTTTTGAGAGGGAGATCATTGTGAGAGATATCAATAGGTTCCACCGATTCACCAACGGTTTGTGCTCTTGTAAAGATTATTGGTGA 2145 0.4284 MKFLSPRKFRRRQSCPISISIPLFHNLYRQASSPLNPTRLNSLLDNAAQYKNLKHATQIHSQIITSNYASHPFIFNNLFLLYAKCGFIDRGLLLFSTAGDDSRNVVTWTTLITQLSHFKMPFLALNYFNRMRCTGIYPNQFTFSAVLPACADTVVVTYGEQMHGLIWKHGFESDTFVASALLDMYAKCSDVSMAEKVFDEMPSRSMVSWNSMIVGFLKNKLYDRAIGFFREGLRETEVDPDQISFSSVLSGCAHTARFDFGKQVHGNIIKRGLITVLYVKNSLVDMYSKCRLFDDAMKLFYNIGDRDVVTWNVMIMGCVHNDNCEAACSYFQAMRREGLSPDEVSYSSALHASANLATLTEGTSIHAQILKTGFTKNACILSSMITMYGKCGNLFDACRVFEETEDHNVVSWTAMIAVYQQHGSANEAIELFEKMLKHGIVPEYITFVSVLSACSHTGQVEVGFKYFNSMANIHNIKPGPEHYACMVDLIARNGRLNEAKKFIESMPMKPDSSIWGALLGACGKYGNVEMGSEVAERLFELEPNNPGNYVLLSNIYARRGMVEKADEVRQLMGINRVRKETGCSWIEFRNQTFVFTVNDKSHSRTDEIYEMLKKLKELAKKRGYVAAIQFATNSVEGSEEQSLWSHSEKLALAFGLLVLPSASSIRIKKNLRTCGDCHTVMKFASEIFEREIIVRDINRFHRFTNGLCSCKDYW 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4241 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Prci1g4241 714 FunFam Pentatricopeptide repeat-containing protein mitochondrial 361 471 - -
Prci1g4241 714 Pfam E motif 525 587 IPR046848 -
Prci1g4241 714 Pfam PPR repeat family 408 455 IPR002885 -
Prci1g4241 714 Pfam PPR repeat family 306 352 IPR002885 -
Prci1g4241 714 Pfam PPR repeat family 103 151 IPR002885 -
Prci1g4241 714 FunFam Pentatricopeptide repeat-containing protein 112 261 - -
Prci1g4241 714 Gene3D Tetratricopeptide repeat domain 469 654 IPR011990 GO:0005515
Prci1g4241 714 SUPERFAMILY TPR-like 327 546 IPR011990 GO:0005515
Prci1g4241 714 Pfam PPR repeat 382 407 IPR002885 -
Prci1g4241 714 Pfam PPR repeat 281 302 IPR002885 -
Prci1g4241 714 Pfam PPR repeat 179 204 IPR002885 -
Prci1g4241 714 Pfam PPR repeat 483 507 IPR002885 -
Prci1g4241 714 Pfam PPR repeat 207 231 IPR002885 -
Prci1g4241 714 FunFam Pentatricopeptide (PPR) repeat-containing protein 472 634 - -
Prci1g4241 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Prci1g4241 714 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 651 IPR046960 GO:0003723|GO:0009451
Prci1g4241 714 Gene3D Tetratricopeptide repeat domain 358 468 IPR011990 GO:0005515
Prci1g4241 714 NCBIfam pentatricopeptide repeat 179 206 IPR002885 -
Prci1g4241 714 NCBIfam pentatricopeptide repeat 410 442 IPR002885 -
Prci1g4241 714 NCBIfam pentatricopeptide repeat 106 139 IPR002885 -
Prci1g4241 714 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Prci1g4241 714 FunFam Pentatricopeptide repeat-containing protein At4g14850 262 360 - -
Prci1g4241 714 Gene3D Tetratricopeptide repeat domain 158 265 IPR011990 GO:0005515
Prci1g4241 714 Gene3D Tetratricopeptide repeat domain 18 157 IPR011990 GO:0005515
Prci1g4241 714 Gene3D Tetratricopeptide repeat domain 266 357 IPR011990 GO:0005515
Prci1g4241 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Prci1g4241 714 Pfam DYW family of nucleic acid deaminases 623 714 IPR032867 GO:0008270
Prci1g4241 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4241 Prci-Chr1 57000795 57003177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4241 104 714 Glycoside Hydrolase AT3G49170 39.355 7.43e-160 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4241 - - pcin:129289492 1440.63