Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4182 ATGGCAACCTCCTCCTCCTCCTCTGCTTTTTCTTTCTTCTCCTTCATCTTCTCCGCCTTCTTACTCTGTCATACCTACTTTGCATCCCTGGGAGCGGAGGCTCGTCCCTGTTCCATTTCATCTCTCATCAGCAAAAAGTTTTTTGAAACCATCTTCCTTCACAAAGATGACACGGCATGCCCTGCCAAGGACTTCTACACCTACAGGTCTTTCATTCACGCCACCAAACGCTTCCCTGAATTTGGCAGCACCGGAAATATATCAACACGAAAGCGAGAGATAGCTGCGTTTCTCGCTCAAATCTCCCACGAGACCACTGGTGGGTGGGCCACTGCACCTGATGGACCCTATGCTTGGGGCTTGTGCTTCAAGCAAGAACTTAAACCTCAAAGTAATTACTGCGACTCCAACAACACTCAATGGCCTTGTTATCCTGGTAAAAGTTACTTTGGCAGAGGACCCATTCAACTTTCCTGGAACTTTAACTATGGGCCGGCCGGGGAGGCTTTGGGATTTGACGGGTTGAAGAATCCTGAGATCGTAGCCAACAATTCTGTGATTGCGTTTAAAACGGCTCTGTGGTTTTGGATGACAGAACGAAAACCGGTACCTTCTCCTCACAATGTGATGGTGGGGAATTATGTGCCGACACGGGTTGATATAGCAGCGAATCGTACGGCTGGCTATGGCTTGGTGACCAACATAATCAACGGTGGATTGGAGTGTGGGATCCCGAACGATCCCAGAGTGAATGATCGAATCGGGTTCTTCCGAAGATATGCCAAGTTGTTTAACGTGGACACCGGACCTAATTTGGATTGCGAGCATCAGAAATCTTTTTAA 843 0.4816 MATSSSSSAFSFFSFIFSAFLLCHTYFASLGAEARPCSISSLISKKFFETIFLHKDDTACPAKDFYTYRSFIHATKRFPEFGSTGNISTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKQELKPQSNYCDSNNTQWPCYPGKSYFGRGPIQLSWNFNYGPAGEALGFDGLKNPEIVANNSVIAFKTALWFWMTERKPVPSPHNVMVGNYVPTRVDIAANRTAGYGLVTNIINGGLECGIPNDPRVNDRIGFFRRYAKLFNVDTGPNLDCEHQKSF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4182 280 ProSitePatterns Chitinases family 19 signature 1. 60 82 IPR000726 GO:0004568|GO:0006032|GO:0016998
Prci1g4182 280 PIRSF Endochitinase 5 280 IPR016283 GO:0004568|GO:0005975
Prci1g4182 280 Gene3D Endochitinase, domain 2 125 183 - -
Prci1g4182 280 Pfam Chitinase class I 42 274 IPR000726 GO:0004568|GO:0006032|GO:0016998
Prci1g4182 280 CDD chitinase_GH19 43 274 - -
Prci1g4182 280 ProSitePatterns Chitinases family 19 signature 2. 187 197 IPR000726 GO:0004568|GO:0006032|GO:0016998
Prci1g4182 280 Gene3D - 46 280 - -
Prci1g4182 280 SUPERFAMILY Lysozyme-like 38 280 IPR023346 -
Prci1g4182 280 PANTHER CHITINASE-RELATED 35 278 - -
Prci1g4182 280 FunFam Endochitinase (Chitinase) 125 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4182 Prci-Chr1 56690567 56692200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4182 15 280 Glycoside Hydrolase AT4G01700 69.173 2.41e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4182 - - rcu:8265868 454.521