Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4025 ATGGCTGTGGCTGCAGCTGCTCTGCACCACCACTTGCTCTACTTCTCGAAATGGAAGACCATCACTTCAACCACACTGCACAGACCCATTCTTTTAAGTTCAAGAAGGAAAGCTCAGTCTTTACTCATTTCCTGCTCGTCTTCCTCGTCGTCGTCTACATCGCAGACTCCAGAAGCTGACACTGAAACCCCGGAATATCACGTCAATCTCGGACTCCAACTCTTCTCCAAGGGACGGGTTAAGGATGCTTTGGTCCAGTTTGAAACTGCTCTTTCTTTGGACCCCAACCCTATGGAAGCCCAGGCTGCGCTTTATAATAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCAGCTGATTGTCTGCGCAAAGCTCTAAAGGAATACAACCTAAAATTTGGTACCATTCTCAATGATCCAGACTTATCCTCTTTCAGAGCTTTGCCTGAATTCAAAGAACTACAGGAAGAGGCCAGGCTAGGCGGTGAAGATATTGGCTATGGTTTTCGAAGAGACTTAAAACTTATTAGTGAAGTTCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTATGTAGTGTTTACTGCAGCTGCAGGAATTTCTACGTTCTTTACTTTGCCTAGGCTATTCCGTGCTATTAATGGGGGGGATGATGCTCCTGATCTTTGGGAAACTGCTGGGAATGCTGCCATCAACATTGGAGGTATCATTGTTCTTGTGGCATTATTTGTCTGGGATAATAAAAAAGAGGAGGAACAACTTGCACAGATATCACGAAATGAGACACTGTCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTAGAACTTGTGCAGCTACGGGACACAGTTAGACCAGTTATATTAGCAGGGAAGAAAGAAACGGTATCTCTGGCTTTGCAAAGAGCAGAGAGATTTCGCACTGAGCTCCTTAGACGCGGTGTTCTGTTGGTTCCTGTAACCTGGGGAGAAGGTAGGGAAGTGAAAATTGGGAAGAAAGGTTTTGGTCTTCCAGGGAAGGCTGCTGTGTCTCTTCCATCCATTGGGGAAGATTTTGATGAGCGAACACAATCCGTAGTTGCAAAGTCAAAGTTGAAAGCTGAAATTAGGTTCAAGGCTGAGGTTATATCGCCAGCAGAATGGGAAAGGTGGATAAGGGATCAGCAGAAGGCGGAAGGAGTTACTCCTGGTGAAGATGTCCACATTATACTGCGGTTAGATGGGCGTGTTCGAAGATCAGGGAAAGGTATGCCTGACTGGCAACAAATTGTGAAAGAGCTGCCACCAATGGAAGCAATTCTAAGCAAGCTAGAAAGATGA 1329 0.4567 MAVAAAALHHHLLYFSKWKTITSTTLHRPILLSSRRKAQSLLISCSSSSSSSTSQTPEADTETPEYHVNLGLQLFSKGRVKDALVQFETALSLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRKALKEYNLKFGTILNDPDLSSFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGIRRFFYVVFTAAAGISTFFTLPRLFRAINGGDDAPDLWETAGNAAINIGGIIVLVALFVWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSLALQRAERFRTELLRRGVLLVPVTWGEGREVKIGKKGFGLPGKAAVSLPSIGEDFDERTQSVVAKSKLKAEIRFKAEVISPAEWERWIRDQQKAEGVTPGEDVHIILRLDGRVRRSGKGMPDWQQIVKELPPMEAILSKLER 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4025 442 SMART tpr_5 101 134 IPR019734 GO:0005515
Prci1g4025 442 SMART tpr_5 64 97 IPR019734 GO:0005515
Prci1g4025 442 Pfam Tetratricopeptide repeat 64 96 IPR013105 -
Prci1g4025 442 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 43 440 - -
Prci1g4025 442 Pfam Low psii accumulation1 / Rep27 172 249 IPR021883 -
Prci1g4025 442 ProSiteProfiles TPR repeat profile. 64 97 IPR019734 GO:0005515
Prci1g4025 442 SUPERFAMILY TPR-like 58 130 IPR011990 GO:0005515
Prci1g4025 442 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 51 157 - -
Prci1g4025 442 Gene3D Tetratricopeptide repeat domain 51 135 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4025 - - vri:117919021 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4025 1 55486610 55489991 Prci1g4025 1 55486610 55489991 ECH