Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3514 ATGGAGTCGAGCATCCTGGAATCCATCGGCGTTGAGATCATCGGAGTGATGTGCCCTGTCTCCATCTGTATGTTCCTCGTCGTTCTCCTCGTCTATTCCCTCTCTGCCTCCAATCCCTTCTCTCCTGCTTCTGTCGATACCATTCGCACCGCTGCCAACCTCGTCTACGTCGAGAACCCTTCCGACTCTGCTTCCCAGAAGCTCGAAGGTGCTCTTCTCAATGCTTTGGTCTTCGTCATCTTAATCGCCATCGTCACTTTCCTCCTCGTTCTTCTTTACTATTACAACTTCACCAATTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTTCTTGGCACCATGGGCGGTTCTATCTTCTTGTCCGTCATTGAAAAATTTTCTATTCCTGTTGATTCCGTTACTTGTTTTCTTCTGCTTTTCAATTTCACTGTTGTCGGCGTTCTCTCTGTGTTTTCGGGTGGGATCCCAATTTTGCTGAGGCAATCCTACATGGTTTGTTTGGGGATTATTGTGGCGGCCTGGTTCACTAAATTGCCCGAGTGGACTACTTGGGTTTTGCTAGTTGCATTGGCTGTGTATGATTTGGTGGCTGTTTTGGCACCCGGTGGCCCGCTTAAGCTGTTGGTGGATTTGGCCTCAACTAGGGATGAAGAGCTTCCTGCCCTGGTGTACGAGGCTCGACCTACGGTCGCTCGATCTGGGCATCGCGGAGCCTCGTCTTTAGGGATTTTGGTCGCTGGAGTTTCAGATTCTTCGTCAATCGAGCTTCAAGCGGTGTCAAGGGACAGCGTCAATAGAAATGAGAACGAAGGTCGCCGTAATGCCGACTATTCTGAAGTGACGTTGGGGAATTTTCAGAATGAGGAGGCTCATAGTGACAGAGATGATGGGGAGAGGTCGCCACTGGTGGGCAATGTACGAGAAAGGCATTCATCAAGTAGTGATTCGTCGCAGTATTCGACGGTTATCGTTCCATCCAGTGAAGGCCAGCAATTTAATGGCGGGGACCATGATGAAATTGTTGGTGAGGAAACGTCTCCCCTTGTTGAAATGATTGGAATGGGGAATGAAGGCAGGCAGGATGGTGATGTGGAGATTGCTGATAGGGGTATTAAACTTGGCCTTGGAGACTTTGTTTTCTACAGTGTCCTTGTGGGTAGAGCTGCAATGTATGACCTTATGACAGTGTATGCTTGTTACCTTGCAATTATATCAGGACTAGGTTGCACTCTAATTTTGTTGTCAGTTTGCCGTCGAGCTCTGCCTGCACTTCCTATTTCTATCACACTGGGTGTTATTTTTTATTTCTTGACACGATTATTAATGGAGCCCTTCATTGTTGGGGCAGCCACAAATTTAATGATGTTTTGA 1377 0.4779 MESSILESIGVEIIGVMCPVSICMFLVVLLVYSLSASNPFSPASVDTIRTAANLVYVENPSDSASQKLEGALLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYMRFSAFFVLGTMGGSIFLSVIEKFSIPVDSVTCFLLLFNFTVVGVLSVFSGGIPILLRQSYMVCLGIIVAAWFTKLPEWTTWVLLVALAVYDLVAVLAPGGPLKLLVDLASTRDEELPALVYEARPTVARSGHRGASSLGILVAGVSDSSSIELQAVSRDSVNRNENEGRRNADYSEVTLGNFQNEEAHSDRDDGERSPLVGNVRERHSSSSDSSQYSTVIVPSSEGQQFNGGDHDEIVGEETSPLVEMIGMGNEGRQDGDVEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVIFYFLTRLLMEPFIVGAATNLMMF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3514 458 Pfam Presenilin 10 448 IPR001108 GO:0004190|GO:0016020|GO:0016485
Prci1g3514 458 PANTHER PRESENILIN 2 458 IPR001108 GO:0004190|GO:0016020|GO:0016485
Prci1g3514 458 FunFam Presenilin 354 449 - -
Prci1g3514 458 PRINTS Presenilin family signature 196 213 IPR001108 GO:0004190|GO:0016020|GO:0016485
Prci1g3514 458 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Prci1g3514 458 PRINTS Presenilin family signature 179 186 IPR001108 GO:0004190|GO:0016020|GO:0016485
Prci1g3514 458 Gene3D Presenilin 356 449 IPR042524 -
Prci1g3514 458 SMART psh_8 69 444 IPR006639 GO:0004190|GO:0016020
Prci1g3514 458 MobiDBLite consensus disorder prediction 308 323 - -
Prci1g3514 458 MobiDBLite consensus disorder prediction 290 307 - -
Prci1g3514 458 MobiDBLite consensus disorder prediction 261 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3514 Prci-Chr1 52232512 52236706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3514 1 458 Miscellaneous Gene Families AT1G08700 66.808 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3514 K04505 - qsa:O6P43_006247 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3514 1 52232512 52236706 Prci1g3514 1 52232512 52236706 ECH