Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3422 ATGGCAAAAGGCGTGGTCTCAGACGAAGAAGACGAGGTCGAACTTGAAGAGGCGGAGCGGGAGCCGGTTGACGGAGATGGGATGGAGGAGGACGAGGACGAGGACGAAGAAGGTCAGGATGAATATGAGAATGATGGATTTATAGTTGACGACGTTGAGGAAGAGGAGGAACAAGATGAAGAAGAGAGGGCAGAAAGCGATGATGAGCGGCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTTCTTGATGAAGATGATTACGAGCTTCTAGAGGACAATAATATCAATATTCACCGTAGAAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAGGGCCAGAGGGACTCTGAGGAGGAGCCTTCGGGATTATCTGATGAGGAGGAATTTGTTGGAAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAACTCAGTCTATTTGGTGATGATGAAGGAGCGCCACTTGAAGATATTGCCGAAGAGGAGGAACAAGGAGAAGAGGAGGAGGATGCTGACATTGGTGAAGAAGATGAAATGGCGGACTTCATTGTGGATGAGGAAGAAGTTGATGAACATGGGGCTCCTATGAGGCGAAAGAAGCTGAAGAGAAAGAAAGCTAGGCAGGCTCCAGGAGTATCTTCGTCAGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTGCTACAGTCACGTAAGCAAAGTCTGGAACTACGTGAATACAGAGAGACTAGACTTGAAGATGAATTTGAGCCTGTTGTCCTTTCTGAGAAATATATGACAGAGAAGGATGATCAAATTAGGGAGCTCGATATTCCAGAAAGAATGCAGATATCAGAGGAGAGTACTGGTGCACCTCCACTAGATGCAAGTAGTATAGCAGAGGAGAGTCATTGGATACTTGAGCAACTTAAAAAGGGAATGGTACCTTGGATTCACAAGAAAGATGTTGGCAATTTACAGATTGACACTCATGACATTGTCAGATTTTTGGAACTGCACCATGTACAGAAATTAGACATTCCTTTTATTGCTATGTATCGGAAAGAGGAGTGCTTAAGCCTATTGAAAAATCCTCAGCAACCTGATGATGAGAATTGGGATAAAACGGAAAAGTCTCCAACTTTAAAATGGCACAAGGTACTTTGGGCAATTCAAGACTTGGACCAGAAGTGGTTGCTTCTTCAGAAACGAAAAAGTGCCCTCCAAGCCTACTATAATAAACGATTTGAAGAAGAGTCCCGTCGTGTTTATGATGAAACAAGACTTGGATTGAACCAGCAATTGTTTGAGTCAGTTATGAGATCGTTGAAGGCTGCAGAAACAGAGAGAGAGGTTGATGATGTTGACTCAAAATTCAACTTGCATTTCCCTCCAGGGGAAGCTGGTGTTGACGAAGGGCAATATAAAAGACCTAAAAGGAAATCAGCGTATAGTTCTTTCAGTAAGGCAGGGCTTTGGGAGGTTGCAAGCAAGTTTGGGCGTAGTGCTGAGCAACTTGGAATGATTTTATCACTTGAAACAATGATTAACGAGTTGGAGAATCCTAAGGAAACACCTGAGGAGATGGCTTCAAATTTCACATGTGCTATGTGTGATACACCTCAAGAAGTGCTTAAATGTGCTAGGCACATGGCAGCCGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTCCGTGCCAACTTTATTGACCATGCCGTGGTGTCAACTTGTCCCACTGCTGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTGCTGGGATAAAGTGGTTGCGGGAGAAACCATTATCTAAATTTGAGGATGCACAATGGCTCCTTATATGGAAGGGGGAGGAGGAGAAACTCCTTCAAGTTACTATCAAGCTGCCTGAAGAGTATCTTGATAAGTTGACAAATGAATTCAATGATTATTACATCAGCGACAGTGTTAGTAGATCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGGTTTCTCTTACCATCAATGGAAAAAGAGGCAAGAGCTTATTTAACGAGCAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTGTGGAATAAGGTTTCTCTGGGACCATATCAACGGAAGGATAATGATCTTAGTGCTGATGATGAAGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCTCAGACAACTTTTGTTATGTTAGATTCATCAGGGGAAGTGCTAGATGTTCTTTATACTAGGTCCCTTACTTTACGGTCTCAAAATGCAAATGACCAGCAACGGAAGAAGAATGACCAGGAGCGTGTTTTGAAGTTCATGACAGACCACCAACCGCATGTCGTTGTTCTAGGAGCAGTGAATTTGTCCTGTACTCGTTTGAAGGATGATATATATGAGATAATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGTCATGAGATGGATGGCCTCAGCATTGTGTATGGGGATGAATCTCTTCCACATTTGTATGAAAATTCTCGAATTTCCTCAGAACAACTTCCCTCACAGCAAGGTATAGTGAGACGTGCTGTAGCACTTGGAAGGTATCTGCAGAATCCCTTGGCAATGGTTGCAACGTTATGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAGTTCCTTGGAGAGCTTTCTCAACCCTGATGAGAAATTTGGGATGGTTGAGCAGATTATGGTAGATGTGACTAATCAGGTGGGCTTAGATGTTAATTTAGCCATAAGCCATGAATGGTTATTCGCTCCTTTACAGTTTATTTCTGGGCTTGGTCCGAGAAAGGCTGCCTCCTTACAGAGGTCCCTGGTAAGAGCTGGAGCAATTTTTACCCGGAAGGACTTTGTGACAGAACATAAACTGGGTAAAAAGGTTTTTGTCAATGCTGTAGGTTTCTTGCGTGTTCGGAGGAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTCGATGATACAAGAATTCATCCAGAATCATATTCTCTTGCACAAGAGTTGGCTAAAGATGTGTATGAGGCGGATGGAACAGGTGATGTGAATGATGATGATGATGCGCTAGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTATTTGAAAAATCTTGATGTTGAGGAATATGCTGTGGGGAAGAAGCGACAGAATAAAAAACAAACTTTCTATGACATAAAAAGAGAATTGATTCAGGGATTTCAGGATTGGCGTAAACAATATGAAGAACCAAATCAGGATGAGGAGTTTTATATGATATCAGGTGAAACTGAGGAGACCCTTGCTGAAGGGAAAATTGTCCAAGCTACAATTCGCAGAGTGCAAGCCCAAAAGGCCATATGTGCGCTTGAATCTGGGTTAACTGGAATTCTCATGAAGGAAGATTACACAGATGACTGGAGGGATTTAGTTGAGTTATCTGACAGGCTACATGAGGGTGACATTCTCACTTGCAAAATCAAATCAATACAGAAGAATAGGTATCAGGTTTTCCTTGTTTGTAGGGAGAGTGAAATGAGAAGTAATCGTTTACAGAGTAACCGTAATATTGACCCCTATTATTATGAAGACCAGAGCTCTCAACAGAGTGAAAAAGACAAAGCTCGGAAAGAGAGAGAGCTTGCAAAGAAACATTTCAAGCCTAGGATGATAGTTCATCCACGTTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTTTTGTCTGACAAAGATTTTGGAGAAAGTATAATCCGGCCTAGCTCACGTGGACCTTCATTTCTTACTTTGACTCTTAAAATCTATGATGGAGTTTATGCTCACAAGGATATAATTGAAGGTGGAAAGGAACACAGGGACATCACAAGCTTACTTCGAATTGGGAAGACACTCAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTAATGGATCGCTATGTTGATCCCTTGGTAGTTCACTTAAAGGCTATGCTAAACTATCGCAAGTTCAAGAAGGGTACAAAGGCAGAAGTTGATGAACTTCTGAGGATGGAGAGAGCAGAGAATCCTATGCGGATAGCCTATAGTTTTGGCATTTCACATGACCATCCAGGCACGTTCATATTGACTTATATAAGAAGTATGAATCCCCACCATGAGTACATTGGGCTTTATCCAAAAGGATTCAAATTCCGGAAAAGGATGTTTGAGGACATTGATCGGCTTGTGGCCTATTTCCAGAGGCACATTGATGATCCCCAGCATGATGTGGCGCCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCGGCCACTGGTGGATCCTCGGGGGCATCAGTGGGCAGTGTGTGGGGTTCTAGTGAAGGTGGTTGGAGAAGTCATGCGGGTGATAGGGATCGATCTTCGACACCTGGCTCCAGGACAGGGCGAACTGACTACAGAAACAGCGGGAATCGGGATGATCACCCCAGTGGTCTGCCACACCCATACAGTGGTGGACGTGGACGTGGACGTGGTCGAGGCTCATATAACAGCCGAGGAAACAACTCCAATAATGAAAGGCAGGATTCTAGCTTTAATGCAGCTAGATGGGGTTCTGTCACAAAGGATGGAGATGATGGTTTAAGCAATTTTCCTGGAGCCAAGGTTCAAAATTCCCCAGGAAGGGAAGCCTTTCCTGGTGGTTGGGGGTCTGGTGGAGCCAGTGGTTGGGGTGGTGGTGACAGTGCAAGTGATGCAGAGCGTGGAAGCTCTGGCTGGGGAGGCGGTCTCAAGAAATCTGATAATGGCTGGTCTGGAAATGCTGGTGGTGGCACTGGCTGGTGA 4848 0.4373 MAKGVVSDEEDEVELEEAEREPVDGDGMEEDEDEDEEGQDEYENDGFIVDDVEEEEEQDEEERAESDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDSEEEPSGLSDEEEFVGSGKGGRTAEEKLKLSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEVDEHGAPMRRKKLKRKKARQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPVVLSEKYMTEKDDQIRELDIPERMQISEESTGAPPLDASSIAEESHWILEQLKKGMVPWIHKKDVGNLQIDTHDIVRFLELHHVQKLDIPFIAMYRKEECLSLLKNPQQPDDENWDKTEKSPTLKWHKVLWAIQDLDQKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLGLNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSAYSSFSKAGLWEVASKFGRSAEQLGMILSLETMINELENPKETPEEMASNFTCAMCDTPQEVLKCARHMAAVEISCEPSIRKHVRANFIDHAVVSTCPTADGNVTIDSFHQFAGIKWLREKPLSKFEDAQWLLIWKGEEEKLLQVTIKLPEEYLDKLTNEFNDYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARAYLTSKAKNWLLMEYGKALWNKVSLGPYQRKDNDLSADDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTRSLTLRSQNANDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLESFLNPDEKFGMVEQIMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYSLAQELAKDVYEADGTGDVNDDDDALEMAIEHVRDRPSYLKNLDVEEYAVGKKRQNKKQTFYDIKRELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIRRVQAQKAICALESGLTGILMKEDYTDDWRDLVELSDRLHEGDILTCKIKSIQKNRYQVFLVCRESEMRSNRLQSNRNIDPYYYEDQSSQQSEKDKARKERELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHRDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVVHLKAMLNYRKFKKGTKAEVDELLRMERAENPMRIAYSFGISHDHPGTFILTYIRSMNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDVAPSIRSVAAMVPMRSPATGGSSGASVGSVWGSSEGGWRSHAGDRDRSSTPGSRTGRTDYRNSGNRDDHPSGLPHPYSGGRGRGRGRGSYNSRGNNSNNERQDSSFNAARWGSVTKDGDDGLSNFPGAKVQNSPGREAFPGGWGSGGASGWGGGDSASDAERGSSGWGGGLKKSDNGWSGNAGGGTGW 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3422 1615 SUPERFAMILY RuvA domain 2-like 1000 1089 IPR010994 -
Prci1g3422 1615 FunFam Transcription elongation factor spt6 473 737 - -
Prci1g3422 1615 SUPERFAMILY Ribonuclease H-like 726 881 IPR012337 -
Prci1g3422 1615 Gene3D SH2 domain 1334 1429 IPR036860 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 1200 1222 - -
Prci1g3422 1615 FunFam Transcription elongation factor spt6 895 989 - -
Prci1g3422 1615 Gene3D - 716 1106 IPR037027 GO:0006139
Prci1g3422 1615 MobiDBLite consensus disorder prediction 1443 1615 - -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 132 150 - -
Prci1g3422 1615 Coils Coil 49 72 - -
Prci1g3422 1615 Gene3D - 995 1087 IPR042066 -
Prci1g3422 1615 Pfam SH2 domain 1204 1420 IPR035420 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 1516 1538 - -
Prci1g3422 1615 SUPERFAMILY SH2 domain 1239 1325 IPR036860 -
Prci1g3422 1615 SMART rnase_8s 726 844 IPR006641 GO:0006139
Prci1g3422 1615 Gene3D - 1107 1194 IPR012340 -
Prci1g3422 1615 SMART S1_6 1112 1185 IPR022967 -
Prci1g3422 1615 CDD SH2_Nterm_SPT6_like 1236 1324 IPR035019 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 156 191 - -
Prci1g3422 1615 ProSiteProfiles S1 domain profile. 1114 1185 IPR003029 GO:0003676
Prci1g3422 1615 FunFam Transcription elongation factor spt6 1107 1195 - -
Prci1g3422 1615 CDD SH2_Cterm_SPT6_like 1335 1421 IPR035018 -
Prci1g3422 1615 Pfam Holliday-junction resolvase-like of SPT6 725 881 IPR028231 -
Prci1g3422 1615 Gene3D SH2 domain 1222 1332 IPR036860 -
Prci1g3422 1615 Gene3D - 482 919 IPR023323 -
Prci1g3422 1615 Pfam HHH domain 1001 1088 IPR041692 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 9 64 - -
Prci1g3422 1615 PIRSF Spt6 3 1489 IPR017072 GO:0032968
Prci1g3422 1615 FunFam Transcription elongation factor spt6 716 886 - -
Prci1g3422 1615 FunFam Transcription elongation factor spt6 1334 1426 - -
Prci1g3422 1615 Pfam Helix-hairpin-helix motif 885 986 IPR032706 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 65 85 - -
Prci1g3422 1615 FunFam Transcription elongation factor spt6 288 470 - -
Prci1g3422 1615 SUPERFAMILY Nucleic acid-binding proteins 1109 1189 IPR012340 -
Prci1g3422 1615 SUPERFAMILY RuvA domain 2-like 897 987 IPR010994 -
Prci1g3422 1615 Gene3D - 255 989 - -
Prci1g3422 1615 Gene3D - 288 481 IPR023319 -
Prci1g3422 1615 SUPERFAMILY Tex N-terminal region-like 319 705 - -
Prci1g3422 1615 FunFam Transcription elongation factor spt6 1222 1333 - -
Prci1g3422 1615 FunFam Transcription elongation factor Spt6 993 1087 - -
Prci1g3422 1615 Pfam Acidic N-terminal SPT6 29 117 IPR028083 -
Prci1g3422 1615 MobiDBLite consensus disorder prediction 1 217 - -
Prci1g3422 1615 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1486 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3422 Prci-Chr1 51667820 51676723 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3422 K11292 - gmx:100809136 2584.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3422 1 51667820 51676723 Prci1g3422 1 51667820 51676723 ECH