Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3339 ATGGACTCGATGGTACTTGTTCGCTCCCACCATTTAACCCCTCCACCTTCCTCCCTCCTTCCCCTCAGCCCTTCACCTCTTTACTCTCTTCCCTTCTCCTCCATCTCCTTTCTCCCTGCTGCTCTTTTCCTTCTTCTTCCATTCTACACAATGAAACTTATCAGTATCAACCCCAAAACCTTCCGACTCAACGCCAAACAACTCTTCCGCTCCAAGAGAGAACGCTCCGCCGTCTCCAGATCCGATCCCCCGTCCTTCAGCAGCTCCGGAACATCGTCTTCTTCCGACGAATCCACCCACAAGCCGGCTCCAGGCGCTCCCGGCTCCAGGACCCCCACCAGCGTCTTGCCGGACATTTCTCCTGACTGGTCTGATCACTCCACTGAAATTCAGTCCGATTTGGCCCAAGCTTTGAGGCTCGTAGACCGAGATGACGACGGAATCATCTCGCGAGAAGAGTTGGAGGCCTTTCTGACCCGGCTCGGTGAGAGTCAGGAGGACGTGGCAATGATGCTTAGTGACGTGGATCCCGAGGGAAGCGGGTGCATCAGCGTCGATGCGCTACTAAGCCGGGTCGGGCCGGGCTGTGGTTCGACGCCGGACTCGGATAGTTTAAGGGAGGCGTTCGAGGTATTCGACACGGATCGTGACGGGAAAATCTCGGCGGAGGAGCTGTTAGAGTTTTTCAAAGCTATCGGGGACGAGCGGTGCACGTTGGAGGAATGCCGGCGAATGATTAAAAGGGTTGATAGGAACGGGGATGGATTCGTGTGCTTCGAGGAGTTTTCCCGTATGATGGAGCCACAGAGGTGA 813 0.5572 MDSMVLVRSHHLTPPPSSLLPLSPSPLYSLPFSSISFLPAALFLLLPFYTMKLISINPKTFRLNAKQLFRSKRERSAVSRSDPPSFSSSGTSSSSDESTHKPAPGAPGSRTPTSVLPDISPDWSDHSTEIQSDLAQALRLVDRDDDGIISREELEAFLTRLGESQEDVAMMLSDVDPEGSGCISVDALLSRVGPGCGSTPDSDSLREAFEVFDTDRDGKISAEELLEFFKAIGDERCTLEECRRMIKRVDRNGDGFVCFEEFSRMMEPQR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3339 270 Pfam EF hand 136 157 IPR002048 GO:0005509
Prci1g3339 270 MobiDBLite consensus disorder prediction 72 127 - -
Prci1g3339 270 ProSiteProfiles EF-hand calcium-binding domain profile. 237 270 IPR002048 GO:0005509
Prci1g3339 270 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Prci1g3339 270 Pfam EF-hand domain pair 204 266 IPR002048 GO:0005509
Prci1g3339 270 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
Prci1g3339 270 MobiDBLite consensus disorder prediction 113 127 - -
Prci1g3339 270 SUPERFAMILY EF-hand 121 266 IPR011992 -
Prci1g3339 270 ProSitePatterns EF-hand calcium-binding domain. 250 262 IPR018247 -
Prci1g3339 270 ProSiteProfiles EF-hand calcium-binding domain profile. 200 235 IPR002048 GO:0005509
Prci1g3339 270 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 204 267 - -
Prci1g3339 270 MobiDBLite consensus disorder prediction 80 100 - -
Prci1g3339 270 FunFam calmodulin-like protein 3 199 270 - -
Prci1g3339 270 Gene3D - 108 193 - -
Prci1g3339 270 CDD EFh 205 266 IPR002048 GO:0005509
Prci1g3339 270 SMART efh_1 167 195 IPR002048 GO:0005509
Prci1g3339 270 SMART efh_1 241 269 IPR002048 GO:0005509
Prci1g3339 270 SMART efh_1 133 161 IPR002048 GO:0005509
Prci1g3339 270 SMART efh_1 204 232 IPR002048 GO:0005509
Prci1g3339 270 CDD EFh 133 192 IPR002048 GO:0005509
Prci1g3339 270 Gene3D - 196 270 - -
Prci1g3339 270 ProSitePatterns EF-hand calcium-binding domain. 213 225 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3339 Prci-Chr1 50912173 50913258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3339 62 268 EF-hand Containing Proteins AT2G41410 48.585 1.82e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3339 K13448 - qsa:O6P43_006439 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3339 1 50912173 50913258 Prci1g3339 1 50912173 50913258 ECH