Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3255 ATGGAGTTCCTTACCTGTTTTCTTCACCAGCGTTTATTAACCCTCTCCTGCTTCTTCGGCTCAGCACCTCCGGTAGCTGTCTCTTTGCCAAAGCTTCCTCGAAACTTTTTGAACACTTACGTTTTCGAGCAGGATTACAGGAATATTTGCGAACTCCTCCTTTCTGTTACTCGCTCAAGGTCTGTCCCTAAGGGACTTCAGCTCCATGCCCATATCATCAAAGCAGGTATCCAGACCATCCCTCTCATATCCCACCATCTTATCAATCTCTATTCAAAATCGCAACTTCCACTTTTTGCCCTCCAAGTTTTTGAAGAGGCGCCGCAGAAGTCAAGCACCACTTGGAGCTCTGTCATATCTTCATTTGCCCAAAATGAGCTTCCTTTACTTGCTCTTGAATTCTTTCGTCGCATGCTTCACAGCGACGTTCGGCCTGACGATCATATATTCCCTAGCGCGACTAAGTCGTGTGCATTTTTATCGATGTGTGACGTTGGGCAGTCTGTGCACTGCCTTGTCGTGAAGACTGGGTATGAATTTGATGTGTTTGTTGGGAGTTCAGTTGTTGATATGTATGCCAAATGTGGAGAGATAAAACTTGCCCGGAAAATGTTCGATGAAATGCCTGAAAAGAATGTGGTTTCTTGGAGCGGGATGATATATGGCTACACTCAAATGTGTGAGGATGATGAAGCTCTCAGACTGTTCAAGCAAGCACTACTGCAAGATGTGGATGTCAATGATTTTACATTGTCTAGTGTATTACGGGTTTGTGGCACCTCAACTTTGCTTGAATTGGGGAAGCAAATACATGGACTGTGCTTCAAGACAAGTTTTGATTCATCAAGCTTCGTGGGTAGTTCTTTGTTATCGCTGTACTCCAAGTGTGGAGTAGTTGAAGGAGCTTATCTGGTGTTTGACGAGATAACTATTAAAAACCTTGGTATGTGGAATGCAATGCTGATAGCATGCGCCCAGCATGCGCACACTAACAAAACGTTTGAGCTGTTCAAACAGATGGAAAGTGTTGGGATGAAACCCAATTTCATCACCTTCTTATGCATACTTTATGCTTGCAGCCATGCAGGATTAGTAGAGAAAGGCCAATGTTACTTTCAGCTGATGAAAGACTATGGTATTAAACCAGGGGCCCAACATTACGCCTCCATGGTAGATTTGCTAGGTCGTGCTGGAAAACTGCAGGAGGCAGTTCAGATGGTTCAAGAAATGCCTATGGAACCAACAGAAAGTGTTTGGGGAGCATTATTGACAGGGTGTAGAATACACGGGAACACTGAATTGGCATCTTATGTTGCTGATAGAGTTTTTGAGTTGGGTCCTGTAAGCGCTGGTCTTCATGTCCTTCTATCTAATGCTTATGCTGCTGCTGGAAGATGGGAAGAAGCAGCAAGAGCGAGGAAGATGCTGAGGGACAAAGGAATAAGGAAGGAAACTGGTTTGAGTTGGGTGGAGGAGGGAAACAGAGTTCACACATTTGCTGCTGGGGATAAATCTCATGTGAAAACCATAGAAATATATAAGAAATTAGAGGAGTTAGGAGAAGAAATGGAGAAAGCTGGATATGTGGCAGACACATCTTTTGTGTTGAAAGAAGTGGACGGTGAAGAGAAGAATCAGACAATCAGATTTCACAGCGAGAGATTAGCCATAGCATTTGGCCTCATTGCCTTCCCTCCTGAACGACCCATCAGAGTAATGAAGAATTTGCGTGTTTGTGGTGATTGCCACACTGCAATCAAGTTTATTAGCAAATGCACTGGAAGGGTAATCATTGTGAGGGATAACAACCGGTTCCACAGATTTGAAGATGGAAAATGCACTTGTGGAGATTATTGGTGA 1860 0.4387 MEFLTCFLHQRLLTLSCFFGSAPPVAVSLPKLPRNFLNTYVFEQDYRNICELLLSVTRSRSVPKGLQLHAHIIKAGIQTIPLISHHLINLYSKSQLPLFALQVFEEAPQKSSTTWSSVISSFAQNELPLLALEFFRRMLHSDVRPDDHIFPSATKSCAFLSMCDVGQSVHCLVVKTGYEFDVFVGSSVVDMYAKCGEIKLARKMFDEMPEKNVVSWSGMIYGYTQMCEDDEALRLFKQALLQDVDVNDFTLSSVLRVCGTSTLLELGKQIHGLCFKTSFDSSSFVGSSLLSLYSKCGVVEGAYLVFDEITIKNLGMWNAMLIACAQHAHTNKTFELFKQMESVGMKPNFITFLCILYACSHAGLVEKGQCYFQLMKDYGIKPGAQHYASMVDLLGRAGKLQEAVQMVQEMPMEPTESVWGALLTGCRIHGNTELASYVADRVFELGPVSAGLHVLLSNAYAAAGRWEEAARARKMLRDKGIRKETGLSWVEEGNRVHTFAAGDKSHVKTIEIYKKLEELGEEMEKAGYVADTSFVLKEVDGEEKNQTIRFHSERLAIAFGLIAFPPERPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3255 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Prci1g3255 619 SUPERFAMILY TPR-like 417 478 IPR011990 GO:0005515
Prci1g3255 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Prci1g3255 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 212 556 IPR046960 GO:0003723|GO:0009451
Prci1g3255 619 NCBIfam pentatricopeptide repeat 114 146 IPR002885 -
Prci1g3255 619 NCBIfam pentatricopeptide repeat 387 410 IPR002885 -
Prci1g3255 619 NCBIfam pentatricopeptide repeat 316 348 IPR002885 -
Prci1g3255 619 NCBIfam pentatricopeptide repeat 187 214 IPR002885 -
Prci1g3255 619 NCBIfam pentatricopeptide repeat 350 383 IPR002885 -
Prci1g3255 619 Gene3D Tetratricopeptide repeat domain 285 547 IPR011990 GO:0005515
Prci1g3255 619 Gene3D Tetratricopeptide repeat domain 45 165 IPR011990 GO:0005515
Prci1g3255 619 FunFam Pentatricopeptide repeat-containing protein At1g50270 167 276 - -
Prci1g3255 619 FunFam Putative pentatricopeptide repeat-containing protein 283 545 - -
Prci1g3255 619 Pfam Pentatricopeptide repeat domain 313 359 IPR002885 -
Prci1g3255 619 Pfam E motif 429 491 IPR046848 -
Prci1g3255 619 FunFam Putative pentatricopeptide repeat-containing protein 44 164 - -
Prci1g3255 619 Pfam PPR repeat 114 141 IPR002885 -
Prci1g3255 619 Pfam PPR repeat 214 238 IPR002885 -
Prci1g3255 619 Pfam PPR repeat 287 310 IPR002885 -
Prci1g3255 619 Pfam PPR repeat 387 411 IPR002885 -
Prci1g3255 619 Pfam PPR repeat 186 213 IPR002885 -
Prci1g3255 619 Pfam E+ motif 496 523 IPR046849 -
Prci1g3255 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Prci1g3255 619 Pfam DYW family of nucleic acid deaminases 527 619 IPR032867 GO:0008270
Prci1g3255 619 Gene3D Tetratricopeptide repeat domain 166 270 IPR011990 GO:0005515
Prci1g3255 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3255 Prci-Chr1 50228930 50231903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3255 42 619 Glycoside Hydrolase AT3G49170 36.395 2.08e-130 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3255 - - qsa:O6P43_006534 987.252