Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3076 ATGGCCACCCTGCCTCCTCTCTGCCCTGGTGTTCCCTCCTCCCGCTCCTTCTTCCTCTGTCTCGCCGCTTTTCTCTTCCTTTCCCTTCTGCCTCTCCTCTCCGCCCAGAAATTATCTTCTTCTTCCGGCTCCGTTCAGATTAACTCCAACTCTGTTCTCGTCGCTCTTCTCGATTCTCATTATACTGAGCTCGCTGAGCTTGTCGAGAAGGCGCTTCTTCTTCAAAAACTTGAGGACACTGTGGGCGCTCACAATATTACCATCTTCGCCCCCCGAAATGAAGCTCTGGAGCGTCAGCTTGACCCCGAGTTTAAGCGATTCCTGCTCGAGCCCGGGAATCTCAGGTCTTTACAGACCCTTCTCATGTATCACATTGTGCCCAAACGAATTGGTTCCACTGACTGGCCAGCTGAGAGCTCTGGAGCCGTCCCGCACCAGACCTTGTGCAACGACCACCTGCATTTGGCGAGCAAGGGTCCTGATAATAAGATTGTTGGTCTGGCCGGCATCGTTCGCCCCGACGACGTCGTCCGTCCGGACGGTGTGATTCACGGCATTGAGCGGCTTTTGGTTCCGCGATCGGTGCAGGAGGATTTTAATCGCCGCAGGAATTTGCGGGACATATCGGCGGTACTTCCAGAGGGTGCGCCGGAGGTGGATCCCCGGACCCACCGGTTGAAGAAACCGGCCCCTGTGCCCGCTGGGGCTCCTCCTGTGTTGCCCATTTACGATGCCATGGCCCCGGGTCCTTCCCTCGCTCCGGCACCGGCACCCGGACCCGGTGGTCCTCACGGTCACTTCAATGGCATGCGTCAGGTGAAAGACTTCATTCATACACTGTTGCATTACGGTGGCTACAACGAAATGGCAGATATTCTGGTTAACCTCACATCTTTGGCCACCGAAATGGGAAGGCTAGTCTCAGAGGGTTATGTCCTGACGGTGTTGGCTCCCAATGACGAGGCCATGGCGAAGCTGACCACGGACCAATTGAGTGAACCGGGTGCACCGGAGCAAATAATCTACTACCATATCATACCGGAGTATCAGACGGAGGAGAGTATGTACAATGCTGTGAGGAGGTTCGGGAAAGTACGGTACGACACGCTGCGGTTGCCACATAAGGTTGTGGCTCAGGAGGCTGATGGGTCAGTGAAGTTTGGGCAAGGTGAAGGGTCTGCTTACCTGTTTGATCCTGATATATATACAGATGGGAGAATTTCAGTACAGGGTATTGATGGAGTTCTTTTCCCGGCCGAAGAGGAGCCAAAGACTGAGCGAAAAACAGTACCAGTCGTCAAAGTTGCCAACAAACCAAGGAGAGGGAAGTTGCTGGAAGTAGCCTGTAGCATGCTTGGAGCTTTTGGACGAGTCTGCTAA 1380 0.5428 MATLPPLCPGVPSSRSFFLCLAAFLFLSLLPLLSAQKLSSSSGSVQINSNSVLVALLDSHYTELAELVEKALLLQKLEDTVGAHNITIFAPRNEALERQLDPEFKRFLLEPGNLRSLQTLLMYHIVPKRIGSTDWPAESSGAVPHQTLCNDHLHLASKGPDNKIVGLAGIVRPDDVVRPDGVIHGIERLLVPRSVQEDFNRRRNLRDISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHGHFNGMRQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGEGSAYLFDPDIYTDGRISVQGIDGVLFPAEEEPKTERKTVPVVKVANKPRRGKLLEVACSMLGAFGRVC 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3076 459 Pfam Fasciclin domain 60 192 IPR000782 -
Prci1g3076 459 Pfam Fasciclin domain 298 418 IPR000782 -
Prci1g3076 459 Gene3D FAS1 domain 52 193 IPR036378 -
Prci1g3076 459 SMART fasc_3 87 193 IPR000782 -
Prci1g3076 459 SMART fasc_3 314 419 IPR000782 -
Prci1g3076 459 SUPERFAMILY FAS1 domain 49 193 IPR036378 -
Prci1g3076 459 ProSiteProfiles FAS1/BIgH3 domain profile. 48 190 IPR000782 -
Prci1g3076 459 SUPERFAMILY FAS1 domain 252 419 IPR036378 -
Prci1g3076 459 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 23 459 IPR044654 -
Prci1g3076 459 FunFam Fasciclin-like arabinogalactan protein 16 268 419 - -
Prci1g3076 459 Gene3D FAS1 domain 292 419 IPR036378 -
Prci1g3076 459 ProSiteProfiles FAS1/BIgH3 domain profile. 273 401 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3076 Prci-Chr1 49180546 49183749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3076 - - jre:109013503 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3076 1 49180546 49183749 Prci1g3076 1 49180546 49183749 ECH