Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3067 ATGAAAAGTGAGGTGGGATCTTCAGGCCGTCAATATGCATTGGTTCCTGAAGGTTTGTGGTTGCGTGCTCTTAAACGGTGTAGTGATTCTAATTATGCAGTGAAGGATTTTGGGAGCCTCTTCTATACAGATGATTGTTTGCCAGATTTGTTCTCCTTGCAAGTGAGGATATTTGTTTCATGGGAAACAAATTCATTGGTAGCAAAGATAAGCCAAAAGGAAAATATGGCTTATGTCTACATGAAAGCTTGCAAAATTTTCATCTCTGAGTATGACCCGGTACAAATTTTGGACTTCTCAGGCCAAACAATTCAGTTTTTCAAAGACGATAATGAGTATTCTGAGAGCTTTGAAAAAGGGGTTCTCTTGGAGCTGCAAGTTTATGGACTTTCTGATTCGATAAAGGTTAATGGAAGCAATGAGCTATTTGTAGATAGATCTACTATCGGATGCTCATCTCACAGTGGCTCTGTTATGATGAATGGAACCTCTCACAATGTGAATTCCAATGTGACAACTATCAACTCCTTTCGAAGGAGTAGCTGTAAAGCAGTTGTTTCTTTGGGCCTGACAGGATTACAGAATCTTGGAAACACTTGTTTTATGAACAGTGCCATCCAATGTTTGGTTCACACCCCCAAGCTTGTTGACTATTTCCTGGGAGATTACCGGAAAGAAATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGGGACTTGCTTAGAAAGTTGTGGTTTCCTGGAGCAAGGGCTGTGTCACCAAGAATGTTCAAGATGAAACTTGCTAATTTTGCCCCTCAGTTTAGTGGTTATAACCAGCATGATTCTCAAGAACTTCTTGCTTTTTTGCTAGATGGACTCCATGAAGACCTTAATTGTGTAAAGCGCAAACCATATCACGAAGTTAAAGATGAAGATGGCCGTCCAGATGAAGAAGTGGCAGAAGAATATTGGCGTAATCACCTTGCCCGCAATGACTCCATAATAGTTGATTTGTTCCAAGGTCAGTTCCGTTCAACATTGGTTTGCCCTGATTGCAAGAAGGTTTCTATCACTTTTGACCCTTTTATGTACCTATCTTTGCCATTACCTTCTACAACAATGAGGATGATTACTTTGACTGTCCTTAACACTAATGGGATCAACCCGCCTTCCAAATTTACCATAACATTACCCAAGAGTGGATTCTTGAAGGATCTTATTGAGGCCTTAGGTGATGCATGTTCCTTAAGAGATGATGAGACCCTCTTGGTAGCTGAGATATACAGGAATTGCATCTGTCGTCTGTTGGAGGAACCATCTGATTCATTGGCCTTGATTAGAGATGAGGACAAACTAGTTGCTTATCGATTGCCAAAAGATGAGGCTGGCCTCTTGGTTGTTTTCATGCATCAGCAGGTGACGAAACAATGCAATTTTGGGAGGGAGAAGCTGGTAGAAAGTCTGTTTGGCATTCCCATTGTGGCAAGGTTGCCCAATATTGCTTCTGGATGTGACATTCGTAGGGAGTTTCTGAAGTTAATTAATCCATTTCTGATGCCCTCTGAAGATTTATTATATGAGTATGATGATGGCAAAAAAGATGATATTGAGGTTAGTGAAGATAATGAGTTGGGTGATGCCACTAACTCTGCGTGCTTGGAAGGCGATTCTGATTCAGATTTAGAGGCTGACTTTAGATTCTACTTAACATCACCACTCCGAATGGAGACTATGGAGATAAAAATGAATGAACCATTACCGTTCACGCTGTTACCTAAAAAGCTGGAGGTTGCTGTCTTATGGTCAGATAAGATGATAAAAAAATATGATACATGCCTACTTAGCTCATTGCCTGAGGTTTTCAAGCCGCAGTTATTCTCCAAGAAAACACAAGAATCTGTTTCTGTTTACAAGTGCCTGGAAGCATTCTTGAAAGAGGAGCCTCTTGGGCCAGAGGACATGTGGTACTGTCCTAAATGCCAAAAACCTCAGCAAGCGACTAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATTCAGTCGATACTTCAAGAACAAGTTAGAAACATTCGTTGATTTCCCAATCAATGATTTGGACCTCTCAACGTATGTTGCCCACAGAAATAGCCCCTCTTCCTGCCATTACGAGTTGTATGCAATCAGCTGTCATTATGGAGGCTTGGGAGGAGGTCATTATACAGCGTTTGTTCGTTATGGACATGATAAATGGTACGAGTTTGATGATAGCAGGGTTGTCCCTGCCAGTGAGGATGTGACAAAGACTTCTGCTGCATACGTTCTTTTCTACAGAAAAGTTTAG 2346 0.4075 MKSEVGSSGRQYALVPEGLWLRALKRCSDSNYAVKDFGSLFYTDDCLPDLFSLQVRIFVSWETNSLVAKISQKENMAYVYMKACKIFISEYDPVQILDFSGQTIQFFKDDNEYSESFEKGVLLELQVYGLSDSIKVNGSNELFVDRSTIGCSSHSGSVMMNGTSHNVNSNVTTINSFRRSSCKAVVSLGLTGLQNLGNTCFMNSAIQCLVHTPKLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARAVSPRMFKMKLANFAPQFSGYNQHDSQELLAFLLDGLHEDLNCVKRKPYHEVKDEDGRPDEEVAEEYWRNHLARNDSIIVDLFQGQFRSTLVCPDCKKVSITFDPFMYLSLPLPSTTMRMITLTVLNTNGINPPSKFTITLPKSGFLKDLIEALGDACSLRDDETLLVAEIYRNCICRLLEEPSDSLALIRDEDKLVAYRLPKDEAGLLVVFMHQQVTKQCNFGREKLVESLFGIPIVARLPNIASGCDIRREFLKLINPFLMPSEDLLYEYDDGKKDDIEVSEDNELGDATNSACLEGDSDSDLEADFRFYLTSPLRMETMEIKMNEPLPFTLLPKKLEVAVLWSDKMIKKYDTCLLSSLPEVFKPQLFSKKTQESVSVYKCLEAFLKEEPLGPEDMWYCPKCQKPQQATKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSTYVAHRNSPSSCHYELYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVVPASEDVTKTSAAYVLFYRKV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3067 781 Pfam Ubiquitin carboxyl-terminal hydrolase 191 778 IPR001394 GO:0004843|GO:0016579
Prci1g3067 781 SUPERFAMILY Cysteine proteinases 189 780 IPR038765 -
Prci1g3067 781 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 724 741 IPR018200 GO:0004843|GO:0006511
Prci1g3067 781 Coils Coil 778 781 - -
Prci1g3067 781 CDD Peptidase_C19R 609 779 - -
Prci1g3067 781 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 191 781 IPR028889 -
Prci1g3067 781 Gene3D Cysteine proteinases 528 781 - -
Prci1g3067 781 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 150 780 - -
Prci1g3067 781 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 192 207 IPR018200 GO:0004843|GO:0006511
Prci1g3067 781 Gene3D Cysteine proteinases 178 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3067 Prci-Chr1 49123098 49130734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3067 635 781 Miscellaneous Gene Families AT4G31670 32.667 3.32e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3067 - K21343 gmx:100791802 1100.89