Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3013 ATGGCTTCTCCGCCCATACTCCATCTACTCTGCCTCTTTTCTCTCATCGCCTTTACTTCATCATCATCTTCATCCATCACTCTCCCCATCTCGCCCTTGCACGCCAAGCACCCATCTTCTGATCCCTTTCAGGCCCTCAAAGTCGTTGCCTCTGCTTCCCTTACCAGAGCTCACCACCTCAAGGACCGTAAATCCAATTCTTCCATCATCAAGACGCCCGATTACCCCAAAAGCTTCGGTGGATACTCTGTTGATCTCAGTTTCGGCACGCCACCTCAATCCTTCCCTTTCGTCCTGGACACCGGAAGTAGCCTCGTCTGGTTCCCTTGCTCCTCCCGTTATCTCTGTTCCAGATGTTCCTTCCCCAACATCGATGCCACTAAACTCCCCAAGTTCATCCCGAAGGATTCTTCCTCCGCCAAGTTCGTCGGTTGTAGAAATCCAAAATGTGGTTGGATTTTCGGCCCCGATCTTCAATCTCGATGCCAACAATGCAAACCCCATGCCCAAAACTGCTCACAGATTTGTCCCACTTATATAATTCAGTACGGCTCGGGCTCCACCGCTGGCTTGTTGCTCGTAGAAAGCCTGGACCTTCCTGGGAAAATCGTGTCAGATTTTCTCGTTGGGTGCTCCATCATGTCCATCCGCCAACCGGCCGGAATCGCCGGCTTTGGTCGAGGGCCCGAATCGCTGCCTTCGCAGTTGGGTCTCAAGAGGTTCTCTTACTGCTTGATCTCTCACCGGTTCGACGACTCCACGGAAAGCAGTGACCTCATTTTGCATAGCGACTCCTCCGGCGGCACTAAAACCGATGGCCTCAGCTACACTCCGTTTCAGGAAAACCCCGCTGCCAACAACCCAGCATTCCGCCAGTACTATTACTTAACTATTCGAAAAATCATCATCGGTGGCAAGCGAGTAAAGATTCCATCCAAACTCTTTGAGCCAGATTCAAAGGGTAACGGGGGCACCATAGTGGACTCAGGCTCCACCTTCACATTCATGGAAAGGCCCATTTTCTACTTGGTGGCACAAGAATTCGAGAAACAGATGGCTAATTTTACCAGAGCCAAGGAGGTAGAAAACCGATCCGGTCTAAGCCCCTGTTTCGATTTTTCAGGTCTGGGCTCGATTTCTTTCCCGGAATTCACCATCAAGTTCAGAGGGGGTGCCAACATGACGTTGCCTGTAGAGAACTATTTCTCGTTGGTGGGCGAATCTCAGGTCGCCTGCTTGACGATTATCTCCGACAAAGGGACCATTCCGGCGGCGGCCGGCGGGCCGGCGGTGATTTTAGGGAACTATCAGCAGCAGAATTTCTACGTGGAATATGACTTGGAAAATGGGAGGTTTGGATTCGGGCCTCGAAGTTGCGAGAAGGAAACTTAG 1392 0.5151 MASPPILHLLCLFSLIAFTSSSSSSITLPISPLHAKHPSSDPFQALKVVASASLTRAHHLKDRKSNSSIIKTPDYPKSFGGYSVDLSFGTPPQSFPFVLDTGSSLVWFPCSSRYLCSRCSFPNIDATKLPKFIPKDSSSAKFVGCRNPKCGWIFGPDLQSRCQQCKPHAQNCSQICPTYIIQYGSGSTAGLLLVESLDLPGKIVSDFLVGCSIMSIRQPAGIAGFGRGPESLPSQLGLKRFSYCLISHRFDDSTESSDLILHSDSSGGTKTDGLSYTPFQENPAANNPAFRQYYYLTIRKIIIGGKRVKIPSKLFEPDSKGNGGTIVDSGSTFTFMERPIFYLVAQEFEKQMANFTRAKEVENRSGLSPCFDFSGLGSISFPEFTIKFRGGANMTLPVENYFSLVGESQVACLTIISDKGTIPAAAGGPAVILGNYQQQNFYVEYDLENGRFGFGPRSCEKET 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3013 463 PANTHER OS07G0603500 PROTEIN-RELATED 35 460 - -
Prci1g3013 463 SUPERFAMILY Acid proteases 79 459 IPR021109 -
Prci1g3013 463 FunFam Aspartyl protease family protein 265 462 - -
Prci1g3013 463 Gene3D Acid Proteases 264 463 IPR021109 -
Prci1g3013 463 FunFam Aspartic proteinase nepenthesin-2 57 259 - -
Prci1g3013 463 Pfam Xylanase inhibitor N-terminal 82 260 IPR032861 -
Prci1g3013 463 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 97 108 IPR001969 GO:0004190|GO:0006508
Prci1g3013 463 ProSiteProfiles Peptidase family A1 domain profile. 82 455 IPR033121 -
Prci1g3013 463 Gene3D Acid Proteases 57 257 IPR021109 -
Prci1g3013 463 Pfam Xylanase inhibitor C-terminal 294 455 IPR032799 -
Prci1g3013 463 PRINTS Pepsin (A1) aspartic protease family signature 325 336 IPR001461 GO:0004190|GO:0006508
Prci1g3013 463 PRINTS Pepsin (A1) aspartic protease family signature 431 446 IPR001461 GO:0004190|GO:0006508
Prci1g3013 463 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Prci1g3013 463 CDD pepsin_A_like_plant 81 459 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3013 Prci-Chr1 48752271 48754357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3013 79 461 Miscellaneous Gene Families AT1G44130 23.529 2.55e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3013 - - pcin:129307094 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3013 1 48752271 48754357 Prci1g3013 1 48752271 48754357 ECH