Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2987 ATGGCATGGATGGAAAACAGTGCAGGGAATGGGAAAGAAAAGGAATTAATGCGAGAGAATGGTTTCTTAACAGTGTCACAACCTTGTATTAGTAGTGGCGGCTCTGGTGGGGATATTGATCCAATAAATAAGAGAGGTGAAGGGAAAGATAATCTTTCGTATGGCAACATCCTACGTTCAAGGAACAAGTTTGCTGATGCTCTTGTTTTATACGATCGTGTCCTTGAGAATGATAGTGGAAATGTCGAGGCTTTAATTGGAAAAGGGATATGCCTGCAAATGCAGAACATGGGGAGGCTTGCTTTTGACAGTTTTGCTGAGGCTATCAAGTTGGATCCTCATAATGCTTGCGCACTTACGCATTGTGGTATTTTATACAAAGAAGAAGGTCGTTTGATGGAGGCTGCTGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTTCTGAATGCCTCGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTTGCAGGAAACACTCAAGAGGGAATTCAAAAATATTATGAAGCTCTCAAAATAGATACTCACTATGCTCCGGCATATTATAACCTTGGTGTTGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCAATGTATGCTGAAGCATACTGCAATATGGGTGTGATTTATAAAAATCGTGGTGATTTGGAGGCAGCTATTGCTTGCTATGAGAGGTGCTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCCTTGACTGATTTGGGAACGAAGGTTAAATTGGAAGGGGACATCAATCAAGGTGTGGCTTATTATAAGAAAGCTTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTCGGGGTTGCTTATGGTGAGATGCTCAAGTTTGACATGGCTATTGTATTTTATGAACTTGCTTTTCACTTCAATCCTCATTGTGCGGAAGCGTGTAACAACCTAGGGGTTATATATAAAGATAAAGACAACCTTGATAAAGCTGTTGAGTGTTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAATCACTGAATAACCTCGGTGTTGTCTATACTGTCCAGGGTAAAATTGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCGGAGGCATACAATAATTTAGGAGTTCTTTATAGGGATATTGGTGATATCACTCTGGCAGTTAATGCTTATGAGCAATGTCTTAAGATAGATCCTGACTCTCGAAATGCTGGCCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGCCACGATGATAAACTTTTTGAAGCTCACAGGGACTGGGGTAGGCGCTTCATGAGATTATATTCACAGTACTCAACATGGGATAACCCTAAAGATCCTGAGCGATCTCTTGTCATAGGATATGTATCTCCTGATTATTTTACCCATTCTGTTTCTTACTTCATAGAGGCTCCCCTTGTCTATCATGACCGCACCAAATATAAAGTCATAGTTTATTCGGCCGTTGTCAAGGCAGATGCAAAAACAATAAAATTTAGGGAGAAAGTTCTACAGAAGGGTGGGATTTGGAGAGATATATATGGGATTGATGAAAAGAGAGTTGCCAACATGGTCAGAGAAGATCAGGTTGACATCCTGGTAGAACTTACTGGTCATACTGCAAACAACAAGTTGGGAATGATGGCATGTCGGCCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCTAATACAACTGGCTTACCTACAATTGATTATAGAATAACTGATTCACTGGCAGATCCTCCTGAAACAAAGCAGAATCATGTTGAGGAGTTAGTTCGGTTACCACAATGCTTCCTTTGTTATACACCTTCGCTTGAAGCTGGGCCTGTTTGTCCTACTCCCGCTTCTAATGGCTTCATTACGTTTGGTAGCTTCAACAATCTTGCCAAGATCACACCTAAAGTGTTGCAAGTTTGGGCAAGGATATTACGTCAAGTTCCAAATTCACGCCTTGTGGTAAAATGCAAACCATTTTGTTGTGATAGTGTGAGACAGAGATTTCTTGCAACGTTGGAGCAGTTAGGTGTGGAGCCACTATGTGTTGATCTTCTGCCCCTAATTCTTCTAAACCATGACCACATGCAAGCATACTCTCTGATGGATATCAGTTTGGACACATTTCCTTATGCTGGAACAACCACCACATGTGAATCTTTGTACATGGGAGTTCCATGCGTCACTATGGCTGGTTCTGTACATGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTCTGAAGCGTTTGGTTGCCGGAAATGAAGATGAATATGTCCAATTGGCTCTACAGCTGGCCTCTGACATACCAGCCCTACAAAAGTTGAGGATGAGTCTTCGAGAACTCATGTCCAAGTCTCCTCTTTGTGATGGAGCGAATTTTACCCTTGGGCTAGAATCAACATTTAGGAACATGTGGCGCAGATATTGCAAAGGAGATGTTCCATCTTTAAAGCGCATAGAATTGTTGCAGCAATCAGCCCCAATGAATGTCCCATCTAACAAGACATCAGAGCCAACAAGTATAGCCAACTCAAGAGACAGCAGCCCAGGATCTGTCAAGACCAGTGAATTAAATTCATCGCAGCCATCCAAGCTCAATATCCGTAGTTGTGAAGAAAATGGGGGGTCATTGAATCACTCTAGTAAACAAGGGAAGGTGGGTTCTAGTTAA 2790 0.4136 MAWMENSAGNGKEKELMRENGFLTVSQPCISSGGSGGDIDPINKRGEGKDNLSYGNILRSRNKFADALVLYDRVLENDSGNVEALIGKGICLQMQNMGRLAFDSFAEAIKLDPHNACALTHCGILYKEEGRLMEAAESYQKALQVDPSYKAASECLAIVLTDIGTNIKLAGNTQEGIQKYYEALKIDTHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDKDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKIDAAASMIEKAIIANPTYAEAYNNLGVLYRDIGDITLAVNAYEQCLKIDPDSRNAGQNRLLAMNYIDEGHDDKLFEAHRDWGRRFMRLYSQYSTWDNPKDPERSLVIGYVSPDYFTHSVSYFIEAPLVYHDRTKYKVIVYSAVVKADAKTIKFREKVLQKGGIWRDIYGIDEKRVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQNHVEELVRLPQCFLCYTPSLEAGPVCPTPAXSNGFITFGSFNNLAKITPKVLQVWARILRQVPNSRLVVKCKPFCCDSVRQRFLATLEQLGVEPLCVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLKRLVAGNEDEYVQLALQLASDIPALQKLRMSLRELMSKSPLCDGANFTLGLESTFRNMWRRYCKGDVPSLKRIELLQQSAPMNVPSNKTSEPTSIANSRDSSPGSVKTSELNSSQPSKLNIRSCEENGGSLNHSSKQGKVGSS 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 300 333 IPR019734 GO:0005515
Prci1g2987 930 ProSiteProfiles TPR repeat region circular profile. 402 434 - -
Prci1g2987 930 SUPERFAMILY TPR-like 351 801 IPR011990 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 370 395 - -
Prci1g2987 930 Gene3D Tetratricopeptide repeat domain 46 158 IPR011990 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 123 148 IPR019734 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 334 367 IPR001440 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 402 434 IPR001440 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 225 258 IPR001440 GO:0005515
Prci1g2987 930 Pfam Tetratricopeptide repeat 191 222 IPR001440 GO:0005515
Prci1g2987 930 Gene3D - 487 642 - -
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 266 299 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 402 435 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 368 401 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 334 367 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 48 81 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 225 258 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 300 333 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 116 149 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 82 115 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 157 190 IPR019734 GO:0005515
Prci1g2987 930 SMART tpr_5 191 224 IPR019734 GO:0005515
Prci1g2987 930 Pfam Glycosyl transferase family 41 659 835 IPR029489 -
Prci1g2987 930 Pfam Glycosyl transferase family 41 480 638 IPR029489 -
Prci1g2987 930 Gene3D Tetratricopeptide repeat domain 159 265 IPR011990 GO:0005515
Prci1g2987 930 SMART sel1 334 365 IPR006597 -
Prci1g2987 930 SMART sel1 402 433 IPR006597 -
Prci1g2987 930 SMART sel1 300 331 IPR006597 -
Prci1g2987 930 SMART sel1 191 222 IPR006597 -
Prci1g2987 930 SMART sel1 225 256 IPR006597 -
Prci1g2987 930 ProSiteProfiles TPR repeat region circular profile. 191 222 - -
Prci1g2987 930 MobiDBLite consensus disorder prediction 868 930 - -
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Prci1g2987 930 SUPERFAMILY TPR-like 49 274 IPR011990 GO:0005515
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Prci1g2987 930 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 41 869 - -
Prci1g2987 930 Gene3D Tetratricopeptide repeat domain 266 473 IPR011990 GO:0005515
Prci1g2987 930 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 266 464 - -
Prci1g2987 930 ProSiteProfiles TPR repeat region circular profile. 116 148 - -
Prci1g2987 930 SUPERFAMILY TPR-like 265 437 IPR011990 GO:0005515
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 368 401 IPR019734 GO:0005515
Prci1g2987 930 ProSiteProfiles TPR repeat region circular profile. 334 366 - -
Prci1g2987 930 ProSiteProfiles TPR repeat region circular profile. 225 257 - -
Prci1g2987 930 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Prci1g2987 930 Gene3D Glycogen Phosphorylase B; 643 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2987 Prci-Chr1 48558074 48571133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2987 210 890 Glycosyltransferase AT3G11540 63.289 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2987 K09667 - gmx:100776844 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2987 1 48558074 48571133 Prci1g2987 1 48558074 48571133 ECH