Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2986 ATGCAAGGCCACGTAGAGATAAGACCAGGGATCCACACCCACGTTGCTCAGTGGCCAATCTATGCTCTGGCATGGTCACTACGTCGCGACAAAAATGCCCGCCTTGCAATAGGTAGTTACATAGAAGACCACACGAACAAGGTTGAACTCGTTCATTTCAACCACGAGTCGTTGAATTACAGTACTGACCCCAATCTGGTCTTTGACCATCCTTATGCTCCGACAAACATAATGTTCTTTCCCTCCGAGGATGACACAAACCCCGACATCGTCGCCACCTCCGGAGATTGCCTAAGACTGTGGGAAATACACGACGATCGGATTGAGCTCAAGTCCCTCCTAACCGGCAACAAAATCAGAGATAACTCAGCCATAACCTCTTTCGACTGGGCAGAGTTTGACACCGGACGCGTGGCTGCATCAAACGTGGACACCACATGTACCATATGGGATATAGAGAGGGAAGCTCTGGACACACAACTAGTGGCACACGACAAAGAAGTGTATGACATATCATGGGGTGGTTTCAATGTATTTGCTTCAGTGTCTGGGGATGGTTCTATGAGAGTTTTTGACTTGAGGGACAAAGAAAGATCGACCATAATATTTGAAAACCCAGCACAAGATTGCCCTCTGCTACGCCTGGAATGGAATAAAGGGGATCCAAGGTTTATAGCAACGGTTGGAATGGACAGTAATAAAGTGGTAATAATGGATATTAGGCAGCCAACCACACCAGTGATGGAATTAAATAAGCATAAGGGAAGTGTTAATGCTATATCGTGGTCCCCACACTTAGGACGTCAGCTTTGCTCTTGCGGCGATGATTCGAGGGCTTTGATCTGGGACGTGGTGGGAAATACTGGATTTCAGGCGAGGAATAATAATGGTGATGATGTGAAGCCAGATATGTGTTATGAATCGACGGCTGAGATCAATCAAGTGCGATGGTCTCCTGTTCAGATGGATTGGGTTGCCCTTGCTTTCCTGAACATGTTGCAGCTTTTGAAGGTGTAG 1017 0.469 MQGHVEIRPGIHTHVAQWPIYALAWSLRRDKNARLAIGSYIEDHTNKVELVHFNHESLNYSTDPNLVFDHPYAPTNIMFFPSEDDTNPDIVATSGDCLRLWEIHDDRIELKSLLTGNKIRDNSAITSFDWAEFDTGRVAASNVDTTCTIWDIEREALDTQLVAHDKEVYDISWGGFNVFASVSGDGSMRVFDLRDKERSTIIFENPAQDCPLLRLEWNKGDPRFIATVGMDSNKVVIMDIRQPTTPVMELNKHKGSVNAISWSPHLGRQLCSCGDDSRALIWDVVGNTGFQARNNNGDDVKPDMCYESTAEINQVRWSPVQMDWVALAFLNMLQLLKV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2986 338 SMART WD40_4 154 192 IPR001680 GO:0005515
Prci1g2986 338 SMART WD40_4 243 283 IPR001680 GO:0005515
Prci1g2986 338 SMART WD40_4 115 151 IPR001680 GO:0005515
Prci1g2986 338 SMART WD40_4 198 239 IPR001680 GO:0005515
Prci1g2986 338 SMART WD40_4 61 102 IPR001680 GO:0005515
Prci1g2986 338 Pfam WD domain, G-beta repeat 246 283 IPR001680 GO:0005515
Prci1g2986 338 Gene3D - 10 332 IPR015943 GO:0005515
Prci1g2986 338 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Prci1g2986 338 Coils Coil 336 338 - -
Prci1g2986 338 PANTHER WD REPEAT CONTAINING PROTEIN 8 338 IPR045159 -
Prci1g2986 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 284 - -
Prci1g2986 338 SUPERFAMILY WD40 repeat-like 19 288 IPR036322 GO:0005515
Prci1g2986 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 284 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2986 Prci-Chr1 48537544 48539567 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2986 K11805 - cave:132191866 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2986 1 48537544 48539567 Prci1g2986 1 48537544 48539567 ECH