Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2966 ATGGCCTTGAAGCGGTTCCTGAGGCCCATTGCTAAACCATCCCCCTCATCGTCATCACTGCCCCTTTCTCCGATCCCCAACCCTCCGCCTCCGGCCCCACCTGATACTTCTCTCCCCCCACTTCCTACTCTAACTCTCTCTCCCGATCCCCACTATCATCACCTCCTTCACTTCGTTAAGACCCATCTTGCTCCTCCTTTCACAGCCGACAGCCTTCTCCACTTCCTCAAATCCAAGCTCCATCACCATCCTAGCTTCACCATCTATGACTTTCATATCTTCAATTGGGCATCCACGATTGACTCCTATCGCCACAACCACTCCACTTTCGAATGGATGGCTCGTACTCTCGCTGTTACCAACCGTCTGGTTGAACTCCGAGCTCTTCTCCAATTCATGGCTTCCAATCCTTGCCCCTGCTCCGACGGTATTTTCTCTTGCTCTCGAACCGAATCCATATTCCAGTTTGTGATTAACGCGTTTTGTAAAGCTCGGAAACTGGAGGATGCTGTTTTCGCTTTTGATTGTATGCGGAGATTGATTGATGGGAAGCCTAATGTGGTTATTTGTAATTGCTTGATCCATGGATTTGTAAAATGCGGAAGGCACGATAGAGCGTTGGAATTTTATGATAAAATGCTTAGAGATAGGGTCAAGCCTGATGTGTTTACTTTTAATATTTTGATCAGTAGTTATTGTCGAATTTCACAGTTTGGATTGGCTTTGGAGTTGTTTAAGGAGATGAGAGAAAAGGGGTGCAATCCCAATGTGGTTACTTTTAATACTTTGATTAAGGGGCTCTTCAGGGAGCGGAAGATTGAAGAAGGGATTGAGATGGCCTACGAGATGATTGAATTGGGGTGTCAGCTTTCAAGTGTAACATGTGAGATTTTGGTTGATGGACTTTGTAAGGAAGGTCAGGTTTTGCGAGCATGTGAAATATTGGCAGACTTGTCTAGCAAGAGACTTTTGCCCAATGGATACGATTATTTTGTTTTGGTGGAAACTCTTTGCGGCAAAGGGAATGTCGTTCGGGCATTGGAGCTTATTTATGAACTGTGGAACCAAGGAAATGCCCCGGGCTTGATTGCTTGCACTACATTAATTGACGGTTTAAGGAGCTTGGGGAAGACTGAAGAAGTATTTAGATTGTCAGAAAAGATGCTTAAAGAGGATATAGTTCTCGATATTGTGACTTTCAATTCTGTTCTTCGGGATACTTGTAATATGCGAAGAACAGCTGATGCAAATAAGTTGAGATTGCTGGCTTCAACAAAGGGTTTAAAACCAGATGGCATGACCTATAGAATTTTAGTTTCAGGGTATGCACGAGAGGGAAATCAAAAGGAGGGAGAGTCAGTGTTAAATGAAATGTTGGATAGGGGATTTATATCTGATCTTGCTACATATAATAAATTGATGTATGGTTTTCTCTAA 1437 0.4349 MALKRFLRPIAKPSPSSSSLPLSPIPNPPPPAPPDTSLPPLPTLTLSPDPHYHHLLHFVKTHLAPPFTADSLLHFLKSKLHHHPSFTIYDFHIFNWASTIDSYRHNHSTFEWMARTLAVTNRLVELRALLQFMASNPCPCSDGIFSCSRTESIFQFVINAFCKARKLEDAVFAFDCMRRLIDGKPNVVICNCLIHGFVKCGRHDRALEFYDKMLRDRVKPDVFTFNILISSYCRISQFGLALELFKEMREKGCNPNVVTFNTLIKGLFRERKIEEGIEMAYEMIELGCQLSSVTCEILVDGLCKEGQVLRACEILADLSSKRLLPNGYDYFVLVETLCGKGNVVRALELIYELWNQGNAPGLIACTTLIDGLRSLGKTEEVFRLSEKMLKEDIVLDIVTFNSVLRDTCNMRRTADANKLRLLASTKGLKPDGMTYRILVSGYAREGNQKEGESVLNEMLDRGFISDLATYNKLMYGFL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2966 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Prci1g2966 478 Gene3D Tetratricopeptide repeat domain 247 323 IPR011990 GO:0005515
Prci1g2966 478 Gene3D Tetratricopeptide repeat domain 333 478 IPR011990 GO:0005515
Prci1g2966 478 Gene3D Tetratricopeptide repeat domain 90 237 IPR011990 GO:0005515
Prci1g2966 478 MobiDBLite consensus disorder prediction 19 43 - -
Prci1g2966 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Prci1g2966 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Prci1g2966 478 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 240 477 - -
Prci1g2966 478 Pfam PPR repeat 157 179 IPR002885 -
Prci1g2966 478 Pfam PPR repeat 188 217 IPR002885 -
Prci1g2966 478 Pfam PPR repeat 293 320 IPR002885 -
Prci1g2966 478 Pfam PPR repeat 364 392 IPR002885 -
Prci1g2966 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Prci1g2966 478 MobiDBLite consensus disorder prediction 1 43 - -
Prci1g2966 478 Pfam PPR repeat 426 458 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 364 396 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 188 222 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 434 465 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 258 291 IPR002885 -
Prci1g2966 478 NCBIfam pentatricopeptide repeat 223 257 IPR002885 -
Prci1g2966 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Prci1g2966 478 Pfam PPR repeat family 220 268 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2966 153 478 Glycosyltransferase AT1G05670 29.969 3.58e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2966 - - qsa:O6P43_009569 656.751