Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2906 ATGGGAAGGCGCTCTGCTCATGTTCTCCTTCCCAAGTTGCATGGATCACTCGGGAAAGACCTCTGCAATTCCATACATGTTCCACTCTCCCTTTCCTTCTGCTCCCAACCTGTTTCAGAGACACCTTCTGAAACCCACTATACCCAAATTAATGAGCTTCCTGTAGAATTTAGCAACCAACCCGATTCACAGGAACAGGAACGGCTTGAACGAGTTAGCAACTTTCGAAATTTACTTGAGAAAGGTCGCGGACATGCCGTCCAAAAGTTCATCAAATCCCTGGTTCTTTCTAAAAGCCCATTTTCTTCTCCCTTCGACATTCTCGCCTACTTCTCTCTCTCAGCACCCTCCTTGAAACCCGTCTTCTCAAATTTGCTTTTCCGGGCTTGCTCCGAGTCCGAGATGGTCGATGAGGCCGTGGAGTTGTACTCTTTGATGAGGAAAGATGGTATGCTTCCTTCGACTGGTTCTGTGAATCGGTTGCTCGAAACTTTGATTGTTTTGAAACAGTATAAGAAAATTCTTGATCTTTTCTCGGATTTTGTGGAGTCTGGTATTCGACCCAACACTTTCTCCTACGGCAAAGCTGTTCAGGCGGCAGTGATGCTGAAGGACTTGAAAAGGGCTCTGGAATTGATGAATGACATGGAGGAGGTTGGAGTTAGCCCATCGTCGTTTATTTATAACCTGGTAATAGGTGGGTTGTGTAAAGCGCGGAGAACCACGGATGCCCACAATCTGTTTGATGAAATGATCAAAAGGAAGCTGGTTCCGAATTTGGTTACTTATAATACGCTGATTGGTGGGTACTGTAAGGTGGGAGAAATAGAGAGAGCTTTGGCTTTGAGGAAGAGGATGATGATCGAAGATGTGGAGCCTAATCTTGTCACGTACAATACTTTGCTGAGTGGTCTTTGTGATTCACAGAGGATGGCAGAAGTGAGGACGTTGTTGCAAGAGATGGAGGCTCAAAAGTTTTTGCCCGATGGATTCATTCGTTTTATATTTGATGATGTTTCGAGTGGAAATGGTTATACTTCACCGGACAAAGGGTGGACAATCGACGAATATACTTGTAGTATTTTGTTGGATGGATTATGCAGAGCGGGGATGGTTGAAAAGGCCATGGAGGTTTTGGCCAAACTAACAGAGAGTGGATTTATACCAAGTAAGATAGTGTACAATATATTAGTGAATGGATATTGCCAAAAGGATGACACAGAGAAAGCCATACTGACAATTGAACAAATGGAAGAACTTGGATTGGAGGCTAGCTATGTGACTTTCAATACCCTGATTAACAAGTTCTTCGAAATAAAGGAGGTGGACAAAGCTGAGAGATGGTTGAAGAAGATGGTACAAAAGGGTGTTCTCCCAAGTCTGGAGACTTACAACATTTTAATTAATGGCTACGGCTCCATGAGTCAATTTGACAAATGTTTCCAGATCCTCGAGGAAATGGAAAAAACAGGGATAGAACCAAGTGTCTTAAGCTATGGTATTCTAGTAAATTGCCTGTGCAAAGGAGGCAAGCTTCTTGAAGCTGAACTGATCTTTGCGGATATGTCAAACCGGGGGGTTTCTCCAAACGCAGAAATATATAATATGCTCATCGAAGGCAGTTGCACGATGGGCAAAATGACAGACGCCTTGAGATTTTTTGATGAAATGATTAAAAATGGACCAGGTGCAACTCTTGTAACATACAATTCGCTCATATATGGACTCGGAAAAGATGGAAGGATAACAGAAGCTGAAGAGTTTTTTCACCAAATGATTAGCAATGGATACAGTCCGGATGTGATCTCATACAACTCCTTGATCGCAGGATTTGCTAGGTCAGGAAACACCCAGAAATGCCTTGAATTGTATGATAATATGAAGAAAGAGGGCATAAAACCTTCTGTTAGGACGTTTCATCCTTTGATCAATGCAAGCATCAAGGAAGGGGCGGTGACAGCAGAGAAGCTGTTTCAGGAAATGTTAGAAATGGGTTTGGTTCCAGATCGGGTTGTATATAATGCAATGATTTACGCTTACACTGAAGAAGGGGATGTTGAGAAGGCAACGTCTTTGCACCAACGGATGGTTGAGCAGGGTATTAATTCGGACAGAGTAACTTATAACAGCTTAATTCTGGTATGGCTTAGAGATAAAAAGGTGTCGGAAATCAAGCATGTTGTTCAAGAGATGAAGGTTAAAGGAGTGGTTCCAAAAGCCGATACATATAACATACTGGTGAAGGGATATTGCGACTTGAAGGATTTCAATGAGGCGTACTTTTGGTATACAGAAATGTCTGACAGAGGTTTTTCCCTAAATGAACGCATCTGTTATCAACTTATCTCCGGACTTAGCCACAAGGGTATGCTACAAGAAGCTCAAATCATTTCCTCAGACTTGAGTTGCAGAGCACAATAA 2421 0.4259 MGRRSAHVLLPKLHGSLGKDLCNSIHVPLSLSFCSQPVSETPSETHYTQINELPVEFSNQPDSQEQERLERVSNFRNLLEKGRGHAVQKFIKSLVLSKSPFSSPFDILAYFSLSAPSLKPVFSNLLFRACSESEMVDEAVELYSLMRKDGMLPSTGSVNRLLETLIVLKQYKKILDLFSDFVESGIRPNTFSYGKAVQAAVMLKDLKRALELMNDMEEVGVSPSSFIYNLVIGGLCKARRTTDAHNLFDEMIKRKLVPNLVTYNTLIGGYCKVGEIERALALRKRMMIEDVEPNLVTYNTLLSGLCDSQRMAEVRTLLQEMEAQKFLPDGFIRFIFDDVSSGNGYTSPDKGWTIDEYTCSILLDGLCRAGMVEKAMEVLAKLTESGFIPSKIVYNILVNGYCQKDDTEKAILTIEQMEELGLEASYVTFNTLINKFFEIKEVDKAERWLKKMVQKGVLPSLETYNILINGYGSMSQFDKCFQILEEMEKTGIEPSVLSYGILVNCLCKGGKLLEAELIFADMSNRGVSPNAEIYNMLIEGSCTMGKMTDALRFFDEMIKNGPGATLVTYNSLIYGLGKDGRITEAEEFFHQMISNGYSPDVISYNSLIAGFARSGNTQKCLELYDNMKKEGIKPSVRTFHPLINASIKEGAVTAEKLFQEMLEMGLVPDRVVYNAMIYAYTEEGDVEKATSLHQRMVEQGINSDRVTYNSLILVWLRDKKVSEIKHVVQEMKVKGVVPKADTYNILVKGYCDLKDFNEAYFWYTEMSDRGFSLNERICYQLISGLSHKGMLQEAQIISSDLSCRAQ 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 542 652 IPR011990 GO:0005515
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 116 204 IPR011990 GO:0005515
Prci1g2906 806 NCBIfam pentatricopeptide repeat 671 702 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 296 329 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 463 496 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 261 294 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 706 738 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 533 561 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 742 775 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 602 636 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 124 154 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 227 259 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 392 423 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 498 531 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 567 601 IPR002885 -
Prci1g2906 806 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 454 525 IPR011990 GO:0005515
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Prci1g2906 806 SUPERFAMILY TPR-like 402 730 IPR011990 GO:0005515
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Prci1g2906 806 Pfam PPR repeat 525 557 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Prci1g2906 806 Pfam PPR repeat 671 701 IPR002885 -
Prci1g2906 806 Pfam PPR repeat 567 596 IPR002885 -
Prci1g2906 806 Pfam PPR repeat 124 150 IPR002885 -
Prci1g2906 806 Pfam PPR repeat 427 457 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 205 337 IPR011990 GO:0005515
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 338 453 IPR011990 GO:0005515
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Prci1g2906 806 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 440 723 - -
Prci1g2906 806 Pfam Pentatricopeptide repeat domain 177 233 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Prci1g2906 806 Pfam PPR repeat family 460 508 IPR002885 -
Prci1g2906 806 Pfam PPR repeat family 258 307 IPR002885 -
Prci1g2906 806 Pfam PPR repeat family 355 403 IPR002885 -
Prci1g2906 806 Pfam PPR repeat family 599 645 IPR002885 -
Prci1g2906 806 Pfam PPR repeat family 704 752 IPR002885 -
Prci1g2906 806 Gene3D Tetratricopeptide repeat domain 653 804 IPR011990 GO:0005515
Prci1g2906 806 SUPERFAMILY HCP-like 362 497 - -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Prci1g2906 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2906 547 805 Glycosyltransferase AT1G05670 21.970 1.53e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2906 - - gmx:100786292 903.664