Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2888 ATGGATAGATCTCGGAAACACCAGGTATCCTTGAGAGGAGCAAGTGCGAAGGAGATAACAAGGGATGCGCTTCTTGAGAAGGTATCCCGGGAAAGAGAGCTTCGCAATTATGCAAAACGAGCTACTGCTGCTGCTCTCTTCATCCAGAGAGTATGGAGGGGCTACAAGGTTACAAGGATGGTTGCTCAGCAACTTCAGCAGGAGTGGGAGACATTGGTGAATCATTACACTGGTGTTATGACAGCCATGTGGATTGCAAACAATTTGTTACGACCATTTCTCTTCTTTATAAGCCGATTCTCAGTTGAGCATCAGAAGATTCACAGCAAGAGAATAGACTCTATGAGGATTTGCTTTACAATCCTATTGGAGAGCCTGAACTCTTCTGATTCAAAGAGGAACTTCTGCTCTCTAGTAACTGGTATGCCTGAAGAAAGGAGAATTTGGAGTCACCAAGCTCGAGGGCTGATATCTCTTGGCTTTGTCATTCTTTCAGAGTTTAGTAAAGGCATTCCAAGGGATCAAGATATTACCTTGGTCACATCCCTTGCAATGCGCGTTCTTGTTATGTTAACTGATTGGAAAGGATGGAAAGGGCTTACTGATGACAATCGTCAAGATGCTGATATAGCGGTGAAAGGTTTGATTGAGTACATGGGGAGTAATGCCAGTGGCAGCTATGTGTGTATTAGTAGATATATCAGTTCATTGGACAACTATTCTTCACAGGAAAAGAATAATAGCCAGACAGATGATAAGTTTTTAATTACTGCAAGTACAATAACTTTGGCTTTGCGGCCATTCTATTTGAGAAGCTCTGATGTAAGAGGCTGTGCTTTGTTGGATGTGAACCATGCTGCTAGGCAGTATTGCTTATATATGCTGACAATTCCTTGGCTTGTGAAACGTCTGCCACCTGTTCTTCGACCTGCTTTAAAGCACAAAACTATTTTGTTCCCATGCTTTTGTGGTATATTGATTTTGAGAGAGAATATTTCAATGGAGATATCACATTTAGTTCATTTAGAGACTCTCGCATCTTCCAAGGCAATTCCAGCAGTTGGTTGGGCTCTCACTAACGTTATCTGCCTAGCAATGGGGAATGAAAATGAATCTGTGGATCATCAATGCTTCCATCAAGGTTTAGACCATGCATTATATGTTCATGTTGTTAACTATCTTGCTGAAACCCTATTGGCTCATCTTTATAATGTTGGATGGATCAAAAAGGGGAAGAAAGCTATTCAGAATGATGTTGAAGCTTTGACAGAGCCCATGGATACAATTCTGTATGAAAATGAAGCTACATACGACTCCTTACTGATTCCCTACACAGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTTCAAAATCTTTTGGCTGCAGCAAACAGAGATGCTGCTGACAGAGCTGAAACTCTTCTTCCAAATGATCTGAAATGCTTGGGCAAGCTGGATTTAAGTGATATTGCTCTTTTTTATTCTAACATGGTAAAAATATATTCAGTCTTGAATCCAATTCGTGGCTCCTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGTCAAGGTTTGGCGTGTATTGGAGGATTCCATTTTCCATGGAGACAACCATACTTCTGAATGCCACATAAGTGGCTACAGCAAACATAATGCATCTGAGAGAAGGCTAAAACATGTCAGTAAGGATGGGTCTAATAAGTGGGTCAGTGTTCTTAATAAATTAACTGGCAAGTCCCAAGCTGCAATGAATAATGCAGAGCCCATCAGTAGTCATCCTGAGCCCAGCCAAATGAATGAGGATTCATCTGATGTGTGGGACATTGAGCCTATGAGGCGTGGTCCTCAAGGCATTTCTAAAGAGACATTCGCTCTACTTCATATATTCTGTGCCACTTATTCTCACCTTCTTTTAGTTCTTGATGATATAGAGTTCTATGAGAAACAGGTTCCATTTAAATTAGAGAAGCAACGAAGAATTGCATCAATGCTTAATACTTTGGTGTACAATGGCTTGTCCCATGGTGTTAGTGAGCAGAATAGACCACTCATGGATTGTGCTATCAGATGCTTACATTTAATGTATGAAAGGAATTGCCGGCATCAATTTTGTCCTCCTGATTTGTGGCTTTCACCTGCCAGAAAAAGCCGGCCTCCTATTGCAGTGGCTGCCAGAACTCATGAAGTTTCATCAGCCAATCTAAGATATGATGATTCATTGGCAGTCCCATGTATGGGTTCTGTTATCACCACAACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGAGAGTTCATTAGGATGGATAAAGCCTCCCGAAAAATGGCTGGGGAAATTTCTGAACCTGGTTCACGAGCAATAGAGATAGTAGTACGTCGGGGTCACATTGTTGAAGATGGATTTCGGCAACTAAATTCCCTTGGGACAAGGTTGAAGTCGTCCATCCATGTTTCTTTTGTGAGTGAATGTGGCCTTCCTGAAGCTGGCCTGGATTATGGTGGGTTATCTAAAGAATTTTTAACTGACATATCAAAAGCAGCCTTTGCCCCAGAATATGGGTTATTTTCCCAAACCTCAACCTCTGAGAGGCTTCTAATGCCAAATTCTTCGGCAAGATTTTTGGATAATGGTCTTCAGATGATTGAGTTTCTTGGAAGAGTTGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCCTTCTCACATGTTTTTGTACAAAAGTTATTGGGGAGATATAGCTTTCTTGATGAGTTATCAACACTTGATCCAGAGCTATATAGGAATCTTATGTATGTCAAGCATTATGATGGTGATGTCAAGGAGCTCTCTCTTGATTTTACTGTTACTGAAGAGTCATTTGGTAAATGGCATGTTGTTGAGCTAAGGTCTGGTGGCAAAGATATCTTGGTGACAAATGAGAACAAAATGCAATACATACATGCAATGGCAGACTACAAACTTAATCAACAGATATTGCCCTTCTCAAATGCATTCTATAGAGGATTGACTGATCTTATATCTCCATCCTGGTTGAGGTTATTCAATGCAAACGAATTTAATCAGCTGCTTTCAGGTGGAAAGTATGATATTGATATTGATGATTTAAAAAAGAACACGCGATACACAGGTGGTTATAATGAAGGAAGCCGAACAATCAAGATATTTTGGGAGGTGATTAAAGACTTTGAACCCCAAGAACGTTGCATGCTTCTTAAGTTTGTCACTAGTTGTTCTCGCGCTCCATTACTTGGGTTCAAATATTTGCAACCAACTTTTACTATTCACAAGGTTGCTAGCGACGTTCCTCTTTGGGCGACATTGGGAGGACAAGATGTAGAGCGGCTTCCTTCAGCTTCAACCTGCTATAATACTCTCAAGCTACCAACCTACAAACGTTCAAGCACGTTGAGAACAAAGCTTCTATATGCAATCAGTTCAAATGCCGGATTTGAACTCTCTTAA 3489 0.407 MDRSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATAAALFIQRVWRGYKVTRMVAQQLQQEWETLVNHYTGVMTAMWIANNLLRPFLFFISRFSVEHQKIHSKRIDSMRICFTILLESLNSSDSKRNFCSLVTGMPEERRIWSHQARGLISLGFVILSEFSKGIPRDQDITLVTSLAMRVLVMLTDWKGWKGLTDDNRQDADIAVKGLIEYMGSNASGSYVCISRYISSLDNYSSQEKNNSQTDDKFLITASTITLALRPFYLRSSDVRGCALLDVNHAARQYCLYMLTIPWLVKRLPPVLRPALKHKTILFPCFCGILILRENISMEISHLVHLETLASSKAIPAVGWALTNVICLAMGNENESVDHQCFHQGLDHALYVHVVNYLAETLLAHLYNVGWIKKGKKAIQNDVEALTEPMDTILYENEATYDSLLIPYTDQFRPVCQQWHLQNLLAAANRDAADRAETLLPNDLKCLGKLDLSDIALFYSNMVKIYSVLNPIRGSLPVLNMLSFTPGFLVKVWRVLEDSIFHGDNHTSECHISGYSKHNASERRLKHVSKDGSNKWVSVLNKLTGKSQAAMNNAEPISSHPEPSQMNEDSSDVWDIEPMRRGPQGISKETFALLHIFCATYSHLLLVLDDIEFYEKQVPFKLEKQRRIASMLNTLVYNGLSHGVSEQNRPLMDCAIRCLHLMYERNCRHQFCPPDLWLSPARKSRPPIAVAARTHEVSSANLRYDDSLAVPCMGSVITTTPHVFPFEERVEMFREFIRMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGTRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSERLLMPNSSARFLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELSLDFTVTEESFGKWHVVELRSGGKDILVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLRLFNANEFNQLLSGGKYDIDIDDLKKNTRYTGGYNEGSRTIKIFWEVIKDFEPQERCMLLKFVTSCSRAPLLGFKYLQPTFTIHKVASDVPLWATLGGQDVERLPSASTCYNTLKLPTYKRSSTLRTKLLYAISSNAGFELS 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2888 1162 Gene3D Hect, E3 ligase catalytic domain 920 999 - -
Prci1g2888 1162 Gene3D Hect, E3 ligase catalytic domain 1037 1161 - -
Prci1g2888 1162 ProSiteProfiles IQ motif profile. 41 70 IPR000048 GO:0005515
Prci1g2888 1162 FunFam E3 ubiquitin-protein ligase UPL7 1037 1161 - -
Prci1g2888 1162 Gene3D Hect, E3 ligase catalytic domains 796 1034 - -
Prci1g2888 1162 SMART hect_3 812 1162 IPR000569 GO:0004842
Prci1g2888 1162 SUPERFAMILY Hect, E3 ligase catalytic domain 794 1155 IPR035983 GO:0004842
Prci1g2888 1162 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1162 IPR044611 GO:0000209|GO:0061630
Prci1g2888 1162 CDD HECTc 794 1160 IPR000569 GO:0004842
Prci1g2888 1162 ProSiteProfiles HECT domain profile. 818 1162 IPR000569 GO:0004842
Prci1g2888 1162 Pfam HECT-domain (ubiquitin-transferase) 849 1162 IPR000569 GO:0004842
Prci1g2888 1162 FunFam Putative Ubiquitin-protein ligase E3C 920 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2888 Prci-Chr1 47577752 47591818 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2888 K10588 - gmx:100527169 1800.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2888 1 47577752 47591818 Prci1g2888 1 47577752 47591818 ECH