Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2765 ATGATCAACTCACCCAACGGCATGATATCCCCGTCTTCATCCGCTACTGCCCAATCCCCTGGTCTCAAGACTTATTTCAAGACTCCTGAGGGTCGCTACAAGCTTCAGTACGAGAAGACACACCCTTCCGCCCTCCTTCACTATGCCCATGGCAAAACCGTCACTCAGGTAACTCTTGCACATCTCAAGGAGAAGCCAGCTCCTTCAACACCGACTGCCCCACCATCTAGTTTTAGTGCCAGCGGTGGGGTACGGTCAGCGGCTGCCAGATTCCTGGGAGGTGGCAATGGAAGCCGCGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAGTATTGGAGTAAACAGTAGGATTGGTTCACTTGGTGCCTCAAGTTCAAGTAGTTTAATGGCTAATTCAAATTTTGATGGCAAAGGGACGTACTTGATCTTCAATGTTGGTGATGCAATTTTTGTTAGTGATTTGAATTCTCAAGACAAGGATCCCATAAAGTCCATTCACTTCAGTAATTCGAATCCTGTGTGCCACGCCTTTGATCAGGAAGCAAAGGATGGACATGATTTGCTTATTGGTTTGAGTACGGGTGATGTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTGATAGGAGCTCATCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTAGTATTGCATGGATTCCTGGAGGTGATGGTGCTTTTGTTGTTGCTCACGCTGATGGGAATTTGTATGTATATGAAAAGAACAAAGATGGTGCTGGAGATTCTTCCTTCCCAGTTATTAAAGATCTTGCACAATTTTCTGTTTCTCATGCACGTTACAGTAAGAGTAATCCATTTGCCAGATGGCACATATGCCAGGGCTCGATTAACAGTATTTCTTTCTCAAATGATGGAGCATACTTAGCTACTGTTGGAAGAGATGGCTATTTGCGAGTGTTTGATTTCCCTAAGGAACAACTTGTATGTGGTGGTAAAAGTTATTATGGTGCTCTGTTATGCTGTGCTTGGAGCATGGATGCAAAATATATTTTGACTGGAGGAGAAGATGATCTAGTGCAAGTTTGGAGCATGGAGGATCGCAAGGTCGTGGCATGGGGTGAGGGGCACAACTCATGGGTCAGCGGAGTGGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATACTGAAACTGTTATGTATCGTTTTGGATCTGTTGGTCAGGATACGCAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTGGTACCATTGCGGCGGCCACCTGGTGGATCCCCCACTTACAGCGCTGGGAGCCAGTCAGCTCATTGGGACAGTGTTGTCCCATTGGGTACGCTGCAACCTGCTCCAAGCATGCGGGATGTTCCAAAAATCTCACCTCTGGTTGCTCATCGTGCACACACCGAACCCCTCTCGGGCTTGATATTTACCCAGGAATCTGTACTCACTGCTTGTCGAGAAGGACACATTAAAATCTGGACGAGACCTGGGATAGCTGAGAGCCAACCAAGCAGCTCTGAAACCTTGTTAGCTGCCAGCTTGAGGGAGAAACCACTGCTTCCAAGCAAGAGCATATCCACAATTTTACTCTCTGGATGA 1641 0.4607 MINSPNGMISPSSSATAQSPGLKTYFKTPEGRYKLQYEKTHPSALLHYAHGKTVTQVTLAHLKEKPAPSTPTAPPSSFSASGGVRSAAARFLGGGNGSRALSFVGGNGSSKSIGVNSRIGSLGASSSSSLMANSNFDGKGTYLIFNVGDAIFVSDLNSQDKDPIKSIHFSNSNPVCHAFDQEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLIGAHHYNKDGSVNNSRCTSIAWIPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPVIKDLAQFSVSHARYSKSNPFARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDFPKEQLVCGGKSYYGALLCCAWSMDAKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSNDNTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSAGSQSAHWDSVVPLGTLQPAPSMRDVPKISPLVAHRAHTEPLSGLIFTQESVLTACREGHIKIWTRPGIAESQPSSSETLLAASLREKPLLPSKSISTILLSG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2765 546 SUPERFAMILY WD40 repeat-like 163 507 IPR036322 GO:0005515
Prci1g2765 546 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Prci1g2765 546 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Prci1g2765 546 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Prci1g2765 546 PANTHER WD REPEAT PROTEIN 13 521 - -
Prci1g2765 546 MobiDBLite consensus disorder prediction 1 23 - -
Prci1g2765 546 SMART WD40_4 211 257 IPR001680 GO:0005515
Prci1g2765 546 SMART WD40_4 370 422 IPR001680 GO:0005515
Prci1g2765 546 SMART WD40_4 286 325 IPR001680 GO:0005515
Prci1g2765 546 SMART WD40_4 471 508 IPR001680 GO:0005515
Prci1g2765 546 SMART WD40_4 328 367 IPR001680 GO:0005515
Prci1g2765 546 Gene3D - 12 515 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2765 Prci-Chr1 46628935 46638077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2765 302 429 Miscellaneous Gene Families AT5G08390 21.094 5.69e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2765 K24741 - gmx:100782580 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2765 1 46628935 46638077 Prci1g2765 1 46628935 46638077 ECH