Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2680 ATGCCTCGTTATGACGATAAATACGGTAATACCCGTTTGTATGTGGGACGTTTGTCCTCAAGGACGCGTTCACGTGACCTGGACAGGCTCTTTGGCAGATATGGGAGAATTCGAGGTGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCCCGAGATGCAGATGATGCAAGATATAACTTAGATGGCCGTGAGGTGGAGGGGAGTCGCATCATTGTCGAATTTGCAAAAGGGGGTCCTCGTGGTTCTCGAGAATACTTGGGTAGAGGTCCTCCTCCGGGATCTGGGCGCTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGGGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTACCGCTGTGGGGAAAGAGGTCATATAGAACGAAACTGCAAGAACAGTCCCAAGAAAATGAGTGGTCATGGTCGAAGTTATTCTCGTTCGCCTGTCAGGTCACGTTCTCCTCGTCGTGGCAGAAGCCGGGATCGTAGTTACAGCCGAGACCGCAGCTACAGCCAATCAAGATCCCCTGTCCGCAGAGAACGCAGCCCTGTTCGTGAAGATAGATCAGAGTCTCCCCGCTACAGAAGTCCAGAACCCAAGAATAGTCCTCCATCTGCCAAGACAAGGAACGATAGCCCTACTTTAGATGAAGGCAATCAACAGGAGAGAGAGGACATGTCTCCTGGGAATGGTGGGCTGACCACCCGGCAAGATGGATCTGACTATAGTGATGGTCCTAGAAGAAGGAGCAGAAGTAGAAGCCCTGTTAGCCCAAAAACTAATGGTGGTGGCCGCAGTGCTAGCCCTAGGGATGATAGGAGCCCCATTGACGATGACGACGACACCCGCCATTCTCCAAGGGGCAGCGAGTCACCTTGA 897 0.5139 MPRYDDKYGNTRLYVGRLSSRTRSRDLDRLFGRYGRIRGVDMKHDYAFVEFSDPRDADDARYNLDGREVEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKMSGHGRSYSRSPVRSRSPRRGRSRDRSYSRDRSYSQSRSPVRRERSPVREDRSESPRYRSPEPKNSPPSAKTRNDSPTLDEGNQQEREDMSPGNGGLTTRQDGSDYSDGPRRRSRSRSPVSPKTNGGGRSASPRDDRSPIDDDDDTRHSPRGSESP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2680 298 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
Prci1g2680 298 MobiDBLite consensus disorder prediction 230 246 - -
Prci1g2680 298 MobiDBLite consensus disorder prediction 134 298 - -
Prci1g2680 298 MobiDBLite consensus disorder prediction 164 201 - -
Prci1g2680 298 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Prci1g2680 298 Gene3D - 91 119 - -
Prci1g2680 298 Gene3D - 120 166 - -
Prci1g2680 298 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Prci1g2680 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 198 - -
Prci1g2680 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Prci1g2680 298 SMART rrm1_1 12 77 IPR000504 GO:0003723
Prci1g2680 298 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Prci1g2680 298 Gene3D - 3 89 IPR012677 -
Prci1g2680 298 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Prci1g2680 298 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Prci1g2680 298 MobiDBLite consensus disorder prediction 207 221 - -
Prci1g2680 298 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2680 Prci-Chr1 46173795 46177299 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2680 K12896 - qsa:O6P43_006741 373.244