Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2675 ATGGCTTGCTCCGGACCGGACCAAATGCCGGTTCATGGCACTCATAAGAATGTGAATGGCGAGACACGCTGCGGTGGGAATCCGTTAAAACACAACGGTCCAAATCGGGAGCTCGTTTCTTGCTCAGCAAGCCATCGCCTCGAGGGGCCGAATCATCTCCAGGGGGGGCTCATGGATCTCAAAAAAGGAATCGCCTTGAACACTCCCTCTGAACCCCCCACACCCACCACCCCTCGTTCCACTCTATTCCTCTCCTCTTCCGCCAAGGCACTCCTTGTTTCCAACTCCAGTAAATCCCTCCAGGCCTCCAATTCCAGTAAATCCATTCTCTCCAATTCCGGCAAGCGCTTCGACAAGAAGAAGTACGTCAAGCAGGTCACCGGCCGCCACAACGACACCGAACTTCACCTCGCCGCTCGGCGTGGTGACGCCGCAGCTATTCGACACATTCTCGGAGAAATCGATGCCCAGATGATCGGAACCCCTAGTGGGGCCGATTTTGATGCCGAGCTCGAGGAGATTAGGTCCGCCATTGTCAATGAGGTCAACGAGTTGGGGGAGACAGCTCTGTTCGTGGCATCCGAGCTGGGGCATATTGACGTGGTGAAGGAGCTTCTACCCCACGCCACCAAGGATGCCCTTTCCTTGAAAAATCAATCCGGCTTCGATGCCTTGCATATTGCTGCTAGCCAAGGTCACCTAGCCATTATACAAGTGTTACTAGACCATGATCCAGAGCTAATAAATACATTTGGACAATCAAATTCAACTCCTCTCATATCAGCATCTACAAAAGGGCATGCGGATGTTGTTAATCTATTATTATCACGAGATCCTAGGCAGGTGGAGTTATCTAGGTCCAATGGAAAGAATGCCCTCCATTTTGCTGCTCGTCAGGGACATGCTTTTATAGTAAAATCACTACTCGAAAAAGATCCACAACTTACTCGAAGGATTGATAAGAAAGGGCAGACTGCGTTGCATATGGCTGTAAAGGGGGTTAGTTGTGAAGTAGTGAGGTTGCTTCTTAATGCAGATCCATCAACTGTTGCGCTACCTGACAAGTTTAACAATACTGCATTACATATTGCCACCAGGAAAAAGAGGGCAGAGATAGTGAGTGAGCTATTGCTTCATCCCGAAACCAATGTTAATGCCCTAACAAGAGACCATAAAACATCTCTTGACATTGCTGAAGGACTCCCCCCATCTGAAGAAATCCTAGAGATAAGAGATTGTCTGATTCGTAGCGGCGGAGTTAAAGCCAATGATCTTAACCAACCAAGGGATGAACTAAGGAGGACTGTGACACAGATTAGGAAGGAGGTCCACATTCAGCTTGAACAAACTCGGAAAACAAACAAGAATGTGGATGGGATTGCCAAGGAGCTACGCAAGCTGCACAGGGCGGGGATCAACAATGCTACCAACTCAGTTACAGTGGTGGCTTCACTCTTTGCAACAGTTGCATTTTCTGCAATTTTTGCTGTTCCTGGTGGGGATTTTGATAGTGGGATGGCCGTTATGGTGTCCACTCCATCTTTTAAGATCTTCTTTATTTCTAATGCAGTTGCACTCTTTACGTCATTGGCTGTTGTCGTGGTTCAAATTACAGTTGTTAGAGGGGAGACAAAGTCTGAAAGGAGGGTTGTGAGAGTGATTAACAAGCTGATGTGGTTGGCCTCTATTTGTACCACAATTGCATTCATTTCATCATCTTATATAGTAATTGGTCGACGAAACATATGGGCTGCGATCCTTGTTACTGTGATAGGGGGAGTTGTGATGGCGGGTGTTCTTGGTGCTATGACATACTTTGTGCTTAAATACAAACGTATTCGGAGGGTGAGAAAGAAAGCCAAATTCTCCAAGAAACATCTAGGGCATCATTCAGATTCAGATTCAGAAATAAATCCGATTTATGCCATTTGA 1932 0.47 MACSGPDQMPVHGTHKNVNGETRCGGNPLKHNGPNRELVSCSASHRLEGPNHLQGGLMDLKKGIALNTPSEPPTPTTPRSTLFLSSSAKALLVSNSSKSLQASNSSKSILSNSGKRFDKKKYVKQVTGRHNDTELHLAARRGDAAAIRHILGEIDAQMIGTPSGADFDAELEEIRSAIVNEVNELGETALFVASELGHIDVVKELLPHATKDALSLKNQSGFDALHIAASQGHLAIIQVLLDHDPELINTFGQSNSTPLISASTKGHADVVNLLLSRDPRQVELSRSNGKNALHFAARQGHAFIVKSLLEKDPQLTRRIDKKGQTALHMAVKGVSCEVVRLLLNADPSTVALPDKFNNTALHIATRKKRAEIVSELLLHPETNVNALTRDHKTSLDIAEGLPPSEEILEIRDCLIRSGGVKANDLNQPRDELRRTVTQIRKEVHIQLEQTRKTNKNVDGIAKELRKLHRAGINNATNSVTVVASLFATVAFSAIFAVPGGDFDSGMAVMVSTPSFKIFFISNAVALFTSLAVVVVQITVVRGETKSERRVVRVINKLMWLASICTTIAFISSSYIVIGRRNIWAAILVTVIGGVVMAGVLGAMTYFVLKYKRIRRVRKKAKFSKKHLGHHSDSDSEINPIYAI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2675 643 ProSiteProfiles Ankyrin repeat profile. 322 344 IPR002110 GO:0005515
Prci1g2675 643 FunFam Ankyrin repeat-containing protein ITN1 281 401 - -
Prci1g2675 643 Gene3D - 86 279 IPR036770 -
Prci1g2675 643 ProSiteProfiles Ankyrin repeat region circular profile. 288 311 - -
Prci1g2675 643 ProSiteProfiles Ankyrin repeat profile. 356 389 IPR002110 GO:0005515
Prci1g2675 643 ProSiteProfiles Ankyrin repeat profile. 220 247 IPR002110 GO:0005515
Prci1g2675 643 FunFam Ankyrin repeat-containing protein ITN1 107 246 - -
Prci1g2675 643 Pfam Ankyrin repeats (3 copies) 135 244 IPR002110 GO:0005515
Prci1g2675 643 Pfam Ankyrin repeats (3 copies) 260 347 IPR002110 GO:0005515
Prci1g2675 643 ProSiteProfiles Ankyrin repeat region circular profile. 322 344 - -
Prci1g2675 643 MobiDBLite consensus disorder prediction 1 32 - -
Prci1g2675 643 Pfam Ankyrin repeat 358 388 IPR002110 GO:0005515
Prci1g2675 643 ProSiteProfiles Ankyrin repeat profile. 288 320 IPR002110 GO:0005515
Prci1g2675 643 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 100 623 - -
Prci1g2675 643 Gene3D - 280 427 IPR036770 -
Prci1g2675 643 SMART ANK_2a 288 317 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 254 284 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 220 250 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 356 386 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 322 352 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 130 159 IPR002110 GO:0005515
Prci1g2675 643 SMART ANK_2a 185 215 IPR002110 GO:0005515
Prci1g2675 643 Pfam Domain of unknown function 472 576 IPR026961 -
Prci1g2675 643 ProSiteProfiles Ankyrin repeat region circular profile. 220 247 - -
Prci1g2675 643 SUPERFAMILY Ankyrin repeat 132 399 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2675 Prci-Chr1 46133411 46137560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2675 46 643 Miscellaneous Gene Families AT3G09550 68.395 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2675 - - qsa:O6P43_010374 836.639