Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2626 ATGGGTCAGGGATCTCCGGGTAGTCTCGGCCGTGGTCATCCGGGAGACCGGAAACAGGATGGTAGCGGCAAGAAGGAGAAAAAGTTTGAACCGGCGGCCCCGCCGGCACGAGTCGGTCGTAAGCAGCGAAAGCAGAAGGGTCCCGAGGCGGCGGCACGATTGCCAACGGTGACGCCCCTCACTAAGTGTAAGCTCCGGCTCTTAAAGCTTGAGCGAATCAAGGATTACTTGTTGATGGAGGAAGAATTTGTGGCTAATCAGGAGCGTCTCAAACCCCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAAGTAGATGACCTTAGGGGTTCGCCTATGAGCGTTGGTAACTTGGAGGAGCTTATAGACGAGAACCATGCCATCGTTTCGTCTTCGGTCGGGCCGGAATACTATGTCGGGATCTTGTCCTTTGTCGATAAGGATCAATTAGAGCCTGGATGTGCAATTTTGATGCACAATAAGGTACTTTCTGTTGTTGGACTTCTTCAAGATGAGGTTGATCCAATGGTCTCTGTCATGAAGGTTGAGAAAGCTCCTTTGGAATCCTATGCTGACATTGGTGGTTTAGATGCTCAGATACAGGAAATAAAGGAAGCTGTTGAGCTTCCTCTGACACATCCTGAACTATACGAAGACATTGGTATCAAGCCTCCTAAGGGGGTCATATTATATGGAGAACCTGGAACAGGAAAGACTTTGCTTGCAAAGGCTGTGGCAAACTCAACGTCAGCAACATTTTTGCGTGTTGTGGGTAGTGAATTGATACAAAAATACTTGGGCGATGGTCCAAAACTTGTGAGGGAACTTTTCAGAGTTGCTGACGACCTTTCCCCTTCTATTGTCTTTATTGATGAGATTGATGCTGTAGGTACAAAGAGGTATGATGCCCACTCTGGTGGGGAGCGTGAAATTCAAAGGACAATGTTGGAGTTGTTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTTAAAGTGATTCTAGCTACCAACAGAATTGAAAGTCTTGATCCTGCTTTGCTGCGGCCTGGTCGAATAGACAGGAAGATAGAGTTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTCCAGATACACACATCAAGGATGACGTTGGCTGATGATGTAAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGTGCTGACATAAAGGCAATATGCACTGAAGCCGGCTTACTTGCTTTAAGAGAACGCCGTATGAAGGTGACGCATGCTGACTTCAAGAAGGCCAAAGATAAGGTGATGTTCAAGAAGAAAGAAGGGGTGCCAGAAGGACTTTATATGTGA 1338 0.4671 MGQGSPGSLGRGHPGDRKQDGSGKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2626 445 Gene3D - 365 439 - -
Prci1g2626 445 MobiDBLite consensus disorder prediction 13 34 - -
Prci1g2626 445 MobiDBLite consensus disorder prediction 89 107 - -
Prci1g2626 445 Pfam AAA+ lid domain 382 426 IPR041569 -
Prci1g2626 445 ProSitePatterns AAA-protein family signature. 330 348 IPR003960 GO:0005524|GO:0016887
Prci1g2626 445 Pfam Proteasomal ATPase OB C-terminal domain 114 167 IPR032501 -
Prci1g2626 445 MobiDBLite consensus disorder prediction 1 53 - -
Prci1g2626 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 438 IPR027417 -
Prci1g2626 445 Gene3D - 180 360 IPR027417 -
Prci1g2626 445 Gene3D - 112 179 IPR012340 -
Prci1g2626 445 FunFam 26S protease regulatory subunit 4 78 179 - -
Prci1g2626 445 FunFam 26S proteasome regulatory subunit 4 365 441 - -
Prci1g2626 445 SMART AAA_5 223 362 IPR003593 GO:0016887
Prci1g2626 445 MobiDBLite consensus disorder prediction 89 109 - -
Prci1g2626 445 FunFam 26S proteasome regulatory subunit 4 180 360 - -
Prci1g2626 445 Pfam ATPase family associated with various cellular activities (AAA) 227 360 IPR003959 GO:0005524|GO:0016887
Prci1g2626 445 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 44 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2626 Prci-Chr1 45762243 45766111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2626 188 430 Miscellaneous Gene Families AT3G47060 44.355 3.44e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2626 K03062 - jre:109006061 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2626 1 45762243 45766111 Prci1g2626 1 45762243 45766111 ECH