Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2605 ATGCTCGTCCACTCGCCTCACTGCAACCCTTCTCTCGTTCATGGGTTCATGCCAGCTGAAGGGAATTTGCGTCGTTTGAGTATAGAAGTCAATAATTGTCTGGACGTGCTGAAGCTTTCCAGCATCCTATTAATGGAGAATTCACCCGATGTGCTTGGCTCAAAAGGCTTGATTAAAAAAATTGAATTTGTGAGGATCATCATTCAGTGCCTATATGCATTAGGGTATAGTAAGTCTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAATCTGCCGAATTTCGGTTGCTTGAATCACAAATACTTAATGGGGATTGGGATGGTTGCGTTAGCACTCTTAATTTAATGAAGGATATGATTGATGAAACTAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATACTTTAGCTTTGAATGTATTAAGGAATCAGGTCTCTTCATTACATGTGGACAAATGCAAGGTTCACAGCCTGGCCAATAGCATGCTTTCCTTGAAGGATACGGAGTTAGGTTTGATAGATGGATCCATTGTCCATGATTTGCGAAGAAAGTTGTTAGCTGACTTGGAGAAATTGATCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAGCTACTCTGACTGCCTGGACTGATTCTTGTATGTATCATAGCTCATCAGATCCAATTTCACTTTATGAGGACCATTGCTGTAGTCGGGATAACATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAGTTTTCTAATAATGGGGAGTACCTCGCCTCTTCATCTAATGATTGCACAGCTATCATATGGAAGGTGCTGGAAGATGGAGAATTGACACTGAAACACACACTACAAGGTCACAAAAGTCCTGTATCTTTCGTGGCGTGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCAGAAGTCTTGAAGCTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGGGAGTCATGGCTTCGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGCTCCGACCCTGAAAAGGGCATCTGCATGTGGGACTGTGATGGAAATGAGCTAAAGGCTTGGAGAGGAGTTAGGATGCCTAAAGTTGTAGATCTTGCTGTTACATCAGATGGGCAGTACCTTATCACCGTATTCATGGAAAAAGAGATTCGGATTTTGCATTTGGGGACGAATATAGATCGAGTCATTTCAGAGGAACACCCAATCACATCCCTTACAGTTTCAGGAGATGGCAAATTCTTCATCGTCAATTTGAACAGCCAGGAGATTCATATGTGGGATGTGGGTGGGGAATGGGATAAGCCATTGAGGTACAAGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGAATAGCACATTCATTGCCAGCGGTAGCGAGAATTCAGAGGTCTACATTTGGAACCGCCGGAACTCAAAACCAATAGAGGTTTTATCTGGGCACACGATGACTGTGAATTGTGTCAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCCAGTGATGATCATACAATTCGTATATGGGGACCCAGCTTATCAAAAAAAGATTGA 1686 0.4312 MLVHSPHCNPSLVHGFMPAEGNLRRLSIEVNNCLDVLKLSSILLMENSPDVLGSKGLIKKIEFVRIIIQCLYALGYSKSASCLELESGISFKSAEFRLLESQILNGDWDGCVSTLNLMKDMIDETRESALFLVFRQCLLEYLSCGQDTLALNVLRNQVSSLHVDKCKVHSLANSMLSLKDTELGLIDGSIVHDLRRKLLADLEKLIPPPITVPERRLEHLVEATLTAWTDSCMYHSSSDPISLYEDHCCSRDNIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGELTLKHTLQGHKSPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGTCKHTFGSHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGVRMPKVVDLAVTSDGQYLITVFMEKEIRILHLGTNIDRVISEEHPITSLTVSGDGKFFIVNLNSQEIHMWDVGGEWDKPLRYKGHKQHKYVIRSCFGGLNSTFIASGSENSEVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDHTIRIWGPSLSKKD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2605 561 CDD WD40 259 553 - -
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Prci1g2605 561 SMART WD40_4 255 294 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 300 339 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 514 554 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 427 465 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 385 425 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 342 383 IPR001680 GO:0005515
Prci1g2605 561 SMART WD40_4 469 511 IPR001680 GO:0005515
Prci1g2605 561 Pfam WD domain, G-beta repeat 258 294 IPR001680 GO:0005515
Prci1g2605 561 Pfam WD domain, G-beta repeat 343 382 IPR001680 GO:0005515
Prci1g2605 561 Pfam WD domain, G-beta repeat 303 339 IPR001680 GO:0005515
Prci1g2605 561 Pfam WD domain, G-beta repeat 516 553 IPR001680 GO:0005515
Prci1g2605 561 Pfam WD domain, G-beta repeat 476 511 IPR001680 GO:0005515
Prci1g2605 561 Gene3D - 249 554 IPR015943 GO:0005515
Prci1g2605 561 PANTHER WD REPEAT PROTEIN 26-RELATED 46 556 - -
Prci1g2605 561 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 92 149 IPR006595 -
Prci1g2605 561 FunFam WD repeat-containing protein 26 homolog 249 554 - -
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 561 - -
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 343 - -
Prci1g2605 561 ProSiteProfiles LIS1 homology (LisH) motif profile. 59 91 IPR006594 GO:0005515
Prci1g2605 561 SUPERFAMILY WD40 repeat-like 252 553 IPR036322 GO:0005515
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 295 IPR001680 GO:0005515
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Prci1g2605 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 553 IPR001680 GO:0005515
Prci1g2605 561 SMART ctlh 92 149 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2605 Prci-Chr1 45576119 45581841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2605 260 418 Miscellaneous Gene Families AT5G08390 30.189 6.53e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2605 K22382 - gmx:100818922 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2605 1 45576119 45581841 Prci1g2605 1 45576119 45581841 ECH