Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2600 ATGAAATTCACAGATATGACAGGATTTCCTCGGCCTCAAGATCAGACCCTACCTTCGTCCTCGTCTTCCTGTAGTTCTAACAGCAGTGGAAAAAATGTATTTAATTTGCTAGCGCATAGAGAGATTTCTGCCAGATCAAAACATGTGCCAAAACAGCACTGGGGAGAAGCTTCTGAACCCAAAACTGGTTCTTGCCCGCATCCTAAAAATGATGCAGTGAGAGATTCGAAACGCAGTCTCCTCTCATGGGTAGAGGCAGAGTCATTGCGGCATTTATCAGCTAAATATTGTTCTTTGTTGCCTCCCCCACGATCTACTATTGCTGCAGCATTTAGCCCAGATGGAAAAGTGCTTGCATCGACACATGGTGACCATACTGTAAAAATAATTGATTGGGAAACTGGAAGTTGCTTAAATGTGTTAATTGGCCATAGGAGGACCCCTTGGGTGGTTAGGTTCCATCCGTTGCAACCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGCTTATGGGATGCTAACACATCAAAATGCATATTATTTCACCATTTCTATCGCCCCATTGCGTCCATTGCTTTTCATGCTGAAGGGGAAATACTTGCCATTGCATCAGGCCACAAGCTCTACATATGGCACTACAACAAGAGAGGTGAAGGATCCTCACCAACATCTGTGTTGAAAACAAGGCGTTCACTTAGGGCCGTTCACTTTCACCCGCATGCAGCACCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCCTCAGATTCCTCAATGACACGGGCTACATCTCCTGGTTATTTACAATATCCTCCACCTGCTGTGATTGTTGCGAATATTCATTTTAAGGAACATATTGCTTTTCCCAGCAGTGAACTACCTTATTTGTCATTACCTTTTTTCTTCTTACCTTCATCTCATGTCGATGATTCAAGAATGGAAACACACAATGCTAGTCTTGTTGCTGGTTCAGAGAACATGCAAGTTGAATCTGCTTCCTCAGCACAGTTTCAAGCAGCCACACATGCTACTGAGCAGTATAATAATACAGTGTCTCCTATGGATACAGTCTCTGAGATTCCTAGTACCTTCTCTAATGGAATGGGGACTGGTATTAGTAACCTTGCTGTGGATGTTATGGACACTGATGAAACAGTACCAGCTGAAGGAAGCCAACATGAAAACTCTACAAATGTCTGTTCTCTGAGTAATGTGCTGCATGGTTTATATAGACAAACAACAAATCATGAGGGTCTTTCTGACTTGGGTCAATTTCACCGTTTTTTCCCTTCAAGAGACCCAAGTGGGTGGGAGCTACCCTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGCGTCCCCTTGGTGCTTCCTCATTTGAGTGGTAGTCGGGACAGCTCAGCTCAGAATGGTTCTTCCATCATGGCATCTAATTTGCCCCTTCATGATGATGAAGCAACAACTTCATCTTCAGCTAATCCAGGAAGCACAAGTATACCAGGAGCTCTAGGGAGATCTGGTTTGCGTAGTCATTTTCCACAATCTCAAGTTCCTGCATCTGATTCTGGCAATATGGCCTCTTCCATTAGTATTCCATATGGTGGTACTGACATTCAAACCATCATAAGTCGGATTCAGTCAGAACTTGCCACATCAGTAGCTGCAGCTGCTGCAGAGCTGCCTTGCACAGTGAAGCTAAGAGTATGGTCGCATGACATAAAAGATCCCTGTGCCTCACTAAGTACTGAAAGATGCCACCTTACAATACCACATGCCGTCTTGTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGGTTTCTGGCTGCATGTGTTGCATGTATGCTTCCTCATGTAGAAGCTGATTCAGGATTACAAGCTCAAGTACAACATGAATCAGGAGTTGCAACGTCCCCAACACGACATCCAATCTCCGCACACCAAGTTATGTACGAGCTTCGCATATATTCCCTTGAGGAGGCAACATTTGGAATGGTGCTTGCATCGCGGGCAATTAGAGCAGCTCACTGTCTGACTTCAATCCAGGTATACAGAGTGTCAGATATGAAACTCGTCATGGTGCTTCCTAGTGCAGAGGATGAGGTCAATGTAGCATGCTTTCATCCTTTTCCTGGTAGAGGGCTTGTTTATGGAACTAAGGAAGGAAAGCTGAGGGTCCTCCACTATGACGGGGCTCATGCAGTAAATGGCACTAAAGCAAGTTACTTACCTGAGGATAACATTATTGGAGTCAACTAA 2274 0.4442 MKFTDMTGFPRPQDQTLPSSSSSCSSNSSGKNVFNLLAHREISARSKHVPKQHWGEASEPKTGSCPHPKNDAVRDSKRSLLSWVEAESLRHLSAKYCSLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDWETGSCLNVLIGHRRTPWVVRFHPLQPHILASGSLDQEVRLWDANTSKCILFHHFYRPIASIAFHAEGEILAIASGHKLYIWHYNKRGEGSSPTSVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTRATSPGYLQYPPPAVIVANIHFKEHIAFPSSELPYLSLPFFFLPSSHVDDSRMETHNASLVAGSENMQVESASSAQFQAATHATEQYNNTVSPMDTVSEIPSTFSNGMGTGISNLAVDVMDTDETVPAEGSQHENSTNVCSLSNVLHGLYRQTTNHEGLSDLGQFHRFFPSRDPSGWELPFLQGWLMGQSQVGVPLVLPHLSGSRDSSAQNGSSIMASNLPLHDDEATTSSSANPGSTSIPGALGRSGLRSHFPQSQVPASDSGNMASSISIPYGGTDIQTIISRIQSELATSVAAAAAELPCTVKLRVWSHDIKDPCASLSTERCHLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHVEADSGLQAQVQHESGVATSPTRHPISAHQVMYELRIYSLEEATFGMVLASRAIRAAHCLTSIQVYRVSDMKLVMVLPSAEDEVNVACFHPFPGRGLVYGTKEGKLRVLHYDGAHAVNGTKASYLPEDNIIGVN 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2600 757 Pfam WD domain, G-beta repeat 135 174 IPR001680 GO:0005515
Prci1g2600 757 Pfam WD domain, G-beta repeat 108 131 IPR001680 GO:0005515
Prci1g2600 757 Gene3D - 84 264 IPR015943 GO:0005515
Prci1g2600 757 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 687 753 - -
Prci1g2600 757 MobiDBLite consensus disorder prediction 487 527 - -
Prci1g2600 757 SUPERFAMILY WD40 repeat-like 107 734 IPR036322 GO:0005515
Prci1g2600 757 MobiDBLite consensus disorder prediction 1 29 - -
Prci1g2600 757 SMART WD40_4 693 733 IPR001680 GO:0005515
Prci1g2600 757 SMART WD40_4 93 131 IPR001680 GO:0005515
Prci1g2600 757 SMART WD40_4 134 174 IPR001680 GO:0005515
Prci1g2600 757 SMART WD40_4 177 214 IPR001680 GO:0005515
Prci1g2600 757 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 179 - -
Prci1g2600 757 Coils Coil 755 757 - -
Prci1g2600 757 MobiDBLite consensus disorder prediction 45 73 - -
Prci1g2600 757 FunFam Activating molecule in BECN1-regulated autophagy protein 88 268 - -
Prci1g2600 757 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Prci1g2600 757 MobiDBLite consensus disorder prediction 9 29 - -
Prci1g2600 757 MobiDBLite consensus disorder prediction 487 504 - -
Prci1g2600 757 MobiDBLite consensus disorder prediction 513 527 - -
Prci1g2600 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 183 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2600 Prci-Chr1 45565794 45574535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2600 94 247 Miscellaneous Gene Families AT5G08390 29.630 6.17e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2600 K17985 - pcin:129312118 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2600 1 45565794 45574535 Prci1g2600 1 45565794 45574535 ECH