Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2582 ATGGAGGACGAGGCTGATATATATGATGGTACTAGATCTCAATTCCCTCTTAGTTTTGGAAAGCAATCCAAGTCTCAAACCCCTCTGGAAGCCATCCACAATGCCACTCGTCGTTCCAGTTCCAATCTCGACTCTAAACCCTCTAGTTCTTCGCATCCCCCCGCCACGACCGCCGACACCAAAAGTACCAATTACCTCCCTTCTATCTCCTCCTCTTCCAAGGCCTGGCTTCTTTCCCTCCGCAGTTCCAAAAACCCTAACCCGGACTCCACCGCCGATCGTCGTGGTGGTGCTTCCACGATTGGGCCGCCTCGGCCACCGCCGCCGGGGGAATCTGATGAGGATGGCGGTGTTATGGTGGGACCGCCTCGGCCGCCTGATGAAGAAGAGGATGATAGTGAGATGATTGGGCCTCCTCTACCGCCTGTTGGTTTAACTCCCGGTGAAGAAGGGGTTGACGATGGGGAGATGATTGGCCCGCCAAGGCCTCCCCCTGGTTCGAATGTGGGTGCGTCAAGTTCCGAGGATGATTCAGACGAAGACGAGGTGGGGAATCGGTTTCGAATTCCGCTTAGCAACGAGATTGTTCTCAAGGGCCACACTAAGGTTGTGTCGGCTCTTGCCGTGGATCACTCCGGGTCTAGAGTACTTTCTGGAAGTTATGACTATACAGTGCGGATGTATGACTTTCAAGGAATGAATTCGCGATTACAATCATTTCGACAACTGGAGCCTTTTGAAGGTCATCAAGTTCGCAATCTAAGCTGGAGTCCAAGTGCAGATCGTTTTTTGTGCGTGACGGGATCGGCTCAAGCAAAGATCTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGGGACATGTATATCCGTGATCTAAAAAATACTAAAGGCCACATATCTGGATTGACATGGGGAGAATGGCACCCAAAAGCCAAGGAAACTATTTTAACATCATCAGAGGATGGATCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCCGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGAAGGCAAATGCATGGCTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGCAGGCCAGATGTATATATTGACAAAGGGCATTCAGATGATATTACTGGCGTGAAATTTTCAAGTGATGGGAGAATTTTACTGTCAAGAAGCTTTGATGGTTCGTTGAAGGTTTGGGATCTGCGCAAAATAAAGGAACCTCTAAAGGTATTTGAAGATCTTCCAAATCACTATGGGCAAACCAACATTGCCTTTAATCCTGATGAAGAACTCTTTTTTACCGGAACATCTGTTGAAAGAGAGAGTTTGAGTGGAGGTTTATTGTGCTTTTATGATCGTGCGAACCTTGAGCTTGTTTCAAGAGTTGGTATATCACCCACTTGTAGTGTTGTGCAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAGGCCAAGGAGGAACTCACATACTATATGATCCAACTGTGAGCGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCCATTGATGATTTTGAGGCAAAACCAGTTGTTCACAATCCTCATGCCTTACCACTGTTTAGAGATCAGCCAAGCCGTAAGCGTCAGCGAGAGAAAATACTGAAGGATCCATTAAAGTCCCATAAGCCTGAACTTCCCATAACAGGACCTGGTTTTGGTGGCCGAGTAGGTGTAAGTCAAGGAAGCTTACTGACTCAATATCTTCTGAAGCAAGGGGGTATGATTAAAGAGACATGGATGGAGGAAGATCCAAGAGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAATGATCCCAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGAGCCTGTTTTTCAAACGTCAGATTCTGACGAGGAAGAGAAATAA 2007 0.4674 MEDEADIYDGTRSQFPLSFGKQSKSQTPLEAIHNATRRSSSNLDSKPSSSSHPPATTADTKSTNYLPSISSSSKAWLLSLRSSKNPNPDSTADRRGGASTIGPPRPPPPGESDEDGGVMVGPPRPPDEEEDDSEMIGPPLPPVGLTPGEEGVDDGEMIGPPRPPPGSNVGASSSEDDSDEDEVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKAKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHEGKCMAGGIGDGSIQIWSIKPGWGSRPDVYIDKGHSDDITGVKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFNPDEELFFTGTSVERESLSGGLLCFYDRANLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKGQGGTHILYDPTVSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADAAANDPKFIAPAYAKTQPEPVFQTSDSDEEEK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2582 668 FunFam WD repeat-containing protein 70 286 528 - -
Prci1g2582 668 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Prci1g2582 668 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Prci1g2582 668 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Prci1g2582 668 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 231 - -
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 340 IPR001680 GO:0005515
Prci1g2582 668 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Prci1g2582 668 Pfam WD domain, G-beta repeat 195 229 IPR001680 GO:0005515
Prci1g2582 668 Pfam WD domain, G-beta repeat 394 425 IPR001680 GO:0005515
Prci1g2582 668 Pfam WD domain, G-beta repeat 353 379 IPR001680 GO:0005515
Prci1g2582 668 Gene3D - 163 286 IPR015943 GO:0005515
Prci1g2582 668 Gene3D - 287 525 IPR015943 GO:0005515
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 333 - -
Prci1g2582 668 MobiDBLite consensus disorder prediction 15 94 - -
Prci1g2582 668 MobiDBLite consensus disorder prediction 647 668 - -
Prci1g2582 668 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 130 667 - -
Prci1g2582 668 FunFam Nucleotide binding protein 141 285 - -
Prci1g2582 668 MobiDBLite consensus disorder prediction 1 183 - -
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 427 - -
Prci1g2582 668 SUPERFAMILY WD40 repeat-like 181 515 IPR036322 GO:0005515
Prci1g2582 668 CDD WD40 196 514 - -
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 427 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 386 425 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 288 331 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 480 524 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 335 379 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 239 276 IPR001680 GO:0005515
Prci1g2582 668 SMART WD40_4 190 229 IPR001680 GO:0005515
Prci1g2582 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 238 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2582 Prci-Chr1 45516357 45520363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2582 318 492 Miscellaneous Gene Families AT5G08390 23.295 2.79e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2582 K24752 - qsa:O6P43_010442 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2582 1 45516357 45520363 Prci1g2582 1 45516357 45520363 ECH