Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2557 ATGGTTGCAATATATAGAAGCCTGGATGCTGCCTTTCATGCCAATCTATCTCAGCATCATTCTTCTGATGAGCTGCCAGTTTTGGAGCGGTGTGAAACATTGTTGAATGGGACTTCTAATTATAAAACGTTCAAGGAACCATGCAAAACATCTCTAGGAGATAACCTACATCGGGAGCAGTCAGTATTTTCACAAACAATGGCTGAATGTGTTAAGGGTCCTTTCAGTTTAGACCATTCTATGGAAGTTGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTGGTGCATGGTAAAGATAAGGATTTTGAGGTTTCTTGCAAGGAAGAGATTCTGATTAAAAGTTCCCAACTGGATGGAAGGGCCCATGAAGATTGTGGGCTTGTTGAAATGGACATAAATCAAGTCACTCAATCTTCACCAGACAGCCCTCCATTTTGTGATACAAAAGGGTCAGACAATGACTGCAGCGACCAGGATAGTGAACATCACATGCCTGTTGAGATATTAGAAAGTTCTTCATCAAAGAGAACAAGCAAAGAAAATGAAATATTGGACAAACGGATCCAGTTGCGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTATTGTGAGGGACTCCAAGAGGCCTAAAAATGGCAATGATGGCATTCAACCTAATGTAACCCATCAAACCAAACCCATGGCTTCTGAATGTAATATGGACCCTAAATGTGGAATGGACCTGAATTCATGTTCAAATGCAAATGTGTGTTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCAGTGTTGCATTATAAAAATGGAAATTTGTTAACGGGAGTTGCGGCGCTCCAACCAAATGTCATACATGTACATAAACTTTGCATTGAATGGTCACCTCAGGTGTATTTTATTGGTGAAACCGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCCAAGCTAAAATGCAGCAAATGCGGCCTCAAGGGGGCTGCTCTTGGATGCTATGTTAAATCCTGTAGGAAAACTTATCATGTTCCTTGTGCAATGGAAATCTCAGCTTGCCGATGGGATGATGAGGAATATCTTATGCTCTGTTCAGCTCATTCTCACGTCAAATTTCCATGTGAGAAATCCAGTTCTGAGAAACAGGGCTCCCAAAAGAAGCATCCTGCGTCATCAAATTTGACACCTAAGCTGTCAAAGCCCCCAGTAGTTTTGTCAGATGATAGTAAACATTTGGTTTTCTGTGGATCTGCTCTGTCTACAGATGAAAAGATACGTTTGATCAATTTTGCAAGTAGGATCGGTGCAACTGTTACCAAGTTTTGGACGCCAGATGTGACACACGTGATTGCAGCAACTGATTCAAATGGAGCGTGTGCCAGGACACTTAAAGTTCTTATGGGCATTTTAAATGGCCAGTGGATCCTTAAAATGGACTGGGTTACTGCAAGCATGGAGATGGCGTGTCCAGTGGAGGAAGAGCCATATGAAATATGTCTTGATAACCATGGGTGTCAAGGTGGCGCAAAAGCTGGCAGGCTTAGGGCATTGGCCAGTGCGCCCAAGCTATTTTGCGGCTTTAGAATGTACTTTTCTGGAGATTACATGTCAGATTATAAGGAGGATCTTGTAGACTTGGTTGTGGCAGGAGGAGGTACTGTTTTGGAGAGCAAGGAAGAATTGCAAACAGAAGCTCATGAAGGCAAGGAGACCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGAAGTAGGTTGGGGGACGAAGTTACAATTCTTTGGGAGAGGTTAAACGAGGCAGAGGATTTAGCTGCTGCCACTGGTTCACAAGTCGTTGGTCACACGTGGATTTTGGAGTCAATTGCTGCATGCAAGTTACAGCCTTTTATTAGTTAG 1905 0.4294 MVAIYRSLDAAFHANLSQHHSSDELPVLERCETLLNGTSNYKTFKEPCKTSLGDNLHREQSVFSQTMAECVKGPFSLDHSMEVDIGKNHKYEKSGNVVHGKDKDFEVSCKEEILIKSSQLDGRAHEDCGLVEMDINQVTQSSPDSPPFCDTKGSDNDCSDQDSEHHMPVEILESSSSKRTSKENEILDKRIQLRSESSASETEGIVRDSKRPKNGNDGIQPNVTHQTKPMASECNMDPKCGMDLNSCSNANVCSFCQSSRTSEVTGPVLHYKNGNLLTGVAALQPNVIHVHKLCIEWSPQVYFIGETVKNLKAEVARGAKLKCSKCGLKGAALGCYVKSCRKTYHVPCAMEISACRWDDEEYLMLCSAHSHVKFPCEKSSSEKQGSQKKHPASSNLTPKLSKPPVVLSDDSKHLVFCGSALSTDEKIRLINFASRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMGILNGQWILKMDWVTASMEMACPVEEEPYEICLDNHGCQGGAKAGRLRALASAPKLFCGFRMYFSGDYMSDYKEDLVDLVVAGGGTVLESKEELQTEAHEGKETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAAATGSQVVGHTWILESIAACKLQPFIS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2557 634 CDD BRCT_Bard1_rpt1 414 493 - -
Prci1g2557 634 Pfam PHD-like zinc-binding domain 291 370 - -
Prci1g2557 634 MobiDBLite consensus disorder prediction 139 230 - -
Prci1g2557 634 MobiDBLite consensus disorder prediction 155 214 - -
Prci1g2557 634 Gene3D BRCT domain 411 517 IPR036420 -
Prci1g2557 634 MobiDBLite consensus disorder prediction 215 230 - -
Prci1g2557 634 FunFam Breast cancer type 1 susceptibility protein homolog 411 517 - -
Prci1g2557 634 ProSiteProfiles Extended PHD (ePHD) domain profile. 250 370 IPR034732 -
Prci1g2557 634 SMART BRCT_7 408 490 IPR001357 -
Prci1g2557 634 SMART BRCT_7 523 627 IPR001357 -
Prci1g2557 634 MobiDBLite consensus disorder prediction 139 154 - -
Prci1g2557 634 MobiDBLite consensus disorder prediction 386 401 - -
Prci1g2557 634 ProSiteProfiles BRCT domain profile. 414 500 IPR001357 -
Prci1g2557 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 372 IPR013083 -
Prci1g2557 634 Gene3D BRCT domain 522 627 IPR036420 -
Prci1g2557 634 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 171 631 IPR031099 GO:0006281|GO:0006974
Prci1g2557 634 MobiDBLite consensus disorder prediction 379 401 - -
Prci1g2557 634 Pfam BRCA1 C Terminus (BRCT) domain 414 486 IPR001357 -
Prci1g2557 634 ProSiteProfiles BRCT domain profile. 521 634 IPR001357 -
Prci1g2557 634 SUPERFAMILY BRCT domain 525 632 IPR036420 -
Prci1g2557 634 SUPERFAMILY BRCT domain 414 500 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2557 Prci-Chr1 45318814 45324636 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2557 K10683 - gmx:100784883 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2557 1 45318814 45324636 Prci1g2557 1 45318814 45324636 ECH