Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2424 ATGTCTGGGGAAGGCTTTGATGGACAGGATGCGGGCTATGTGCCTGAGAACCCGAATTTTCCACAAAATCATTCTGATGAACATGATGCGGGAGTGATTGATAATTCCGGATTTCCTGAACAAGAGTCTGAACATGATGCAGGGAATGTAGTTGAGGAATACAATCCTCCAGACAATCATTTGGATGGACTTGATGCTGGAGATTTGCCCAAAAATTCTGAGTCTCCACAAAAGCATATTGATGAGCATCATGAGGTAGGAGATATAACTGAGAGTTTTGATTCTCAGAAGCAGGAACATGACATAGATTCAAAAGGAACTGAAATAAAACGGTGGCCGGGGTGGCCTGGAGAGAATGTATTCAGAATGTTGGTTCCTGTTCAGAAGGTAGGCAGTATTATTGGCCGCAAGGGGGAATTTATTAAGAAAATTACTGAAGAGACAAAAGCTCGCATTAAAATACTCGATGGTCCCCCTGGAACCTCAGAAAGAGCTGTAATGGTATCTGCAAAAGAAGAGCCAGATCGCACCATACCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGTGATCTTGCTGATAGCACATCTGTTGCTGGGCGCTCTGTTGTTACAAGACTTCTTGTTGCTGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCTACTATAAAATCCATTCAAGATACATCCAGTTGCACCATACGAGTTCTTGGATCAGAGCACCTGCCAGTTTTTGCTCTGCGAGATGATAGCGTTGTTGAAATACAAGGTGAATCTGCTGGAGTTCACAAGGCAGTTGAACTTATTGCAACTCATCTACGGAAGTTCTTGGTGGACCGAAGCATAGTTGGAGTATTTGAAACACAGATGCAATCAGCAGATGTTCGACCCAACCAGAATGTGCCACCACATCAGCCGTGGGGTCCTCCTCCTCAAGGGTTTCCAGCTCCTGCAGCTGGTGGACCTCCATTTGCTCCTAATCCTCAATATATGCCACCTTCACATCACTACGATAACTATTATCCGCCTGCTGATCTGCCTCCTATTGACAAACACCTTCATCAGGGACCACCTGCTTATGGAAGGGATGCTTCCATGGTTTCCAGTGCGCAACCACAACAATCTGTTGTGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCTGATGCAGTTATTGGAACGTCAGGTGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGTACCAGGGGAGATGACAGTTGAAATAAGTGGGACTGCTTCACAAATACAGACTGCTCAACAGCTGGTGCAGAACTTCATGGCTGAAGCTGCAAGCACGGCACAGGATCAAATGGGTGGATCAGTTGGGCAAGGCTACAATTCGTATCCTGCTAATGCTCCTGTTTACGCGTCTCCACCCTCAAGCGCTGGTGGCCATACAGGCCATGCGCCTGCTGCTGATTATGGTCCTGTATACGGCACCAATTATGGTTATTGA 1545 0.4608 MSGEGFDGQDAGYVPENPNFPQNHSDEHDAGVIDNSGFPEQESEHDAGNVVEEYNPPDNHLDGLDAGDLPKNSESPQKHIDEHHEVGDITESFDSQKQEHDIDSKGTEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRTIPPAVDGLLRVHKQIVNVDRDLADSTSVAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDTSSCTIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELIATHLRKFLVDRSIVGVFETQMQSADVRPNQNVPPHQPWGPPPQGFPAPAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPIDKHLHQGPPAYGRDASMVSSAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASTAQDQMGGSVGQGYNSYPANAPVYASPPSSAGGHTGHAPAADYGPVYGTNYGY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2424 514 ProSiteProfiles Type-1 KH domain profile. 388 452 - -
Prci1g2424 514 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 110 477 - -
Prci1g2424 514 Pfam KH domain 212 279 IPR004088 GO:0003723
Prci1g2424 514 Pfam KH domain 390 453 IPR004088 GO:0003723
Prci1g2424 514 Pfam KH domain 121 173 IPR004088 GO:0003723
Prci1g2424 514 ProSiteProfiles Type-1 KH domain profile. 118 185 - -
Prci1g2424 514 CDD KH-I_PEPPER_like_rpt3 388 456 - -
Prci1g2424 514 CDD KH-I_PEPPER_rpt1_like 118 186 - -
Prci1g2424 514 ProSiteProfiles Type-1 KH domain profile. 209 278 - -
Prci1g2424 514 MobiDBLite consensus disorder prediction 311 339 - -
Prci1g2424 514 MobiDBLite consensus disorder prediction 27 51 - -
Prci1g2424 514 Gene3D - 118 288 - -
Prci1g2424 514 MobiDBLite consensus disorder prediction 1 110 - -
Prci1g2424 514 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 292 IPR036612 GO:0003723
Prci1g2424 514 CDD KH-I_PEPPER_rpt2_like 211 283 - -
Prci1g2424 514 SMART kh_6 117 197 IPR004087 GO:0003676
Prci1g2424 514 SMART kh_6 208 283 IPR004087 GO:0003676
Prci1g2424 514 SMART kh_6 387 457 IPR004087 GO:0003676
Prci1g2424 514 MobiDBLite consensus disorder prediction 64 108 - -
Prci1g2424 514 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 378 459 IPR036612 GO:0003723
Prci1g2424 514 Gene3D K Homology domain, type 1 376 465 IPR036612 GO:0003723
Prci1g2424 514 MobiDBLite consensus disorder prediction 303 374 - -
Prci1g2424 514 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 113 172 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2424 Prci-Chr1 44427928 44433646 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2424 K21444 - gmx:100799901 787.719