Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2409 ATGCAACACTACCACCCCCAATCCCATACCGCCGCCACCCCCGGTGGCGCCGGCAGTGTCATTCCCGACGTCAAGCGCGGCAAAAAGCGCGGCAATTATAACTGTGGACGCTGCGGTCTTCCTAAGAAGGGTCATGTTTGCCATCTCAGAACTCCCACATCTGCCCCTGCTACTACTCCTACCGATTTATCCGTATCGAGTTTTTCTGCCATTTCCGGCCCTTCATCTGTCAGCGCAGCTCGTCAGCCGCCGCCCCGGCAGCCTTACTCTCGCCTCCGTCGCGCGCTATCATTCGATGACGTCGATGACCATACCAGCGGATTTGATCCGTCGGAGTTGTCTGACGGAGACGATCCGGATCTATTTTTGGACCCAGAGCCGGTTCTGGATTCGTCCGGGTTGCCAGCAAATCTTTTGTGGGAAGTGCTGAAGAGGTTGCCGCCGACGGGATTGTTGTCAGCGGCTAGGGTATGTAAGGGATGGAGGGATATGACGAGGAGGCTGTGGAGGGCAGCGGAAGAGCTTAAACTCAGGGTTCCAGCAGGCGTTCAGCTGGGATTTGTTGCATCGATGCTGCAGAAGTGTCCGGGGGTCGTAAAGCTCTCTCTTAAAATGGAAAGCGATGTAGATTCGACCATGCTGGCCTGCATTGCATTCTCATGCCCCAATCTTGAGTTTATGGATATGTCAACATCTAATACTGCAATCAATCGGATCAATGGGGATGAATTAAGTCGATTTGTTGCTGATAAACGAAGCTTGAAATGCCTCAAGATGGAAGGTTGTCATAATCTGGGGGGTTTTGTTCTGTGTTCTTCCAGTCTTTCAACACTTTGGCTATCGGATCTCCATTCTCTTTCTAAGATGGTATTTAATTGTCCCCAGCTAAGAGAGATATCATTAGAATTTTCTCGCCAAGAAAATGAAACTACTGATATCACTGCCATGGTTGAAAATTTGGGGCGAACTTGCCCGAGGTTGCAAAACATACATATAGCTTCAATGCAGCTTTCTAATGCTGCTGTGCTTGCTCTAACGTCTGCTCAGTTGAGAGGGTTGCAAATGCTTTCTCTAGTTCTTGGATCTGAAGTTACCGATGCATCAGTTGCTGCAATTGCTTCCAGCTATCCAAATCTAGAATTGCTTGATCTCAGTGGATCTAGTATCAGTGACAGTGGAATTGGGATAATCTGCAATACATTCCCTGAAACATTGTCAAGACTTCTCCTTGCCCTTTGCCCCAACGTGACCTCAAGTGGCATTCAATTTGCTTCAGCTCAATTGCCACTCCTTGAACTTATGGACTGTGGCATGACCATATGTGATCCTAATTCCGAAAGTCAAACTGCTGATGAAAACAACTGCAAATCACTGGAGACATCCAATTCTAATCTTCACCTTGTGAATCAGAAGTTAATTATCAAACATAACCGATTGAAGAAACTAAGTTTATGGGGCTGTTCTGGCTTGGATGCTCTATATTTAAACTGCCCGCAGCTCAATGATCTGAATCTAAATTCTTGTAAAAATTTGCACCCAGAGAGATTGTTGCTTCAGTGCCCCAGTTTAGAAAACGTGCATGCATCAGGTTGTCAGGACATGCTAATTGGGGCTATTCAAAGTCAGGTCTGCAATGCTTTTACTGCTATGGAGAACCTATCACCTTATAAACGTCTACCCGATGGCTCCAAAAGGGTCAGGGTTCCGCATTTTCTCAGTAGTGAGTTGCCTCATGATGGGAAAAAGCGGAGGAGGGCTGAGAAAAGGCTCTGCAATGTCCATGTCGACAGATTTTACTGA 1800 0.4711 MQHYHPQSHTAATPGGAGSVIPDVKRGKKRGNYNCGRCGLPKKGHVCHLRTPTSAPATTPTDLSVSSFSAISGPSSVSAARQPPPRQPYSRLRRALSFDDVDDHTSGFDPSELSDGDDPDLFLDPEPVLDSSGLPANLLWEVLKRLPPTGLLSAARVCKGWRDMTRRLWRAAEELKLRVPAGVQLGFVASMLQKCPGVVKLSLKMESDVDSTMLACIAFSCPNLEFMDMSTSNTAINRINGDELSRFVADKRSLKCLKMEGCHNLGGFVLCSSSLSTLWLSDLHSLSKMVFNCPQLREISLEFSRQENETTDITAMVENLGRTCPRLQNIHIASMQLSNAAVLALTSAQLRGLQMLSLVLGSEVTDASVAAIASSYPNLELLDLSGSSISDSGIGIICNTFPETLSRLLLALCPNVTSSGIQFASAQLPLLELMDCGMTICDPNSESQTADENNCKSLETSNSNLHLVNQKLIIKHNRLKKLSLWGCSGLDALYLNCPQLNDLNLNSCKNLHPERLLLQCPSLENVHASGCQDMLIGAIQSQVCNAFTAMENLSPYKRLPDGSKRVRVPHFLSSELPHDGKKRRRAEKRLCNVHVDRFY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2409 599 SUPERFAMILY F-box domain 125 172 IPR036047 GO:0005515
Prci1g2409 599 MobiDBLite consensus disorder prediction 51 88 - -
Prci1g2409 599 Gene3D Ribonuclease Inhibitor 173 359 IPR032675 -
Prci1g2409 599 FunFam Uncharacterized protein 128 315 - -
Prci1g2409 599 Gene3D Ribonuclease Inhibitor 382 574 IPR032675 -
Prci1g2409 599 SMART LRR_CC_2 376 400 IPR006553 -
Prci1g2409 599 SMART LRR_CC_2 324 348 IPR006553 -
Prci1g2409 599 SMART LRR_CC_2 350 375 IPR006553 -
Prci1g2409 599 SMART LRR_CC_2 497 520 IPR006553 -
Prci1g2409 599 FunFam Uncharacterized protein 451 560 - -
Prci1g2409 599 SUPERFAMILY RNI-like 189 417 - -
Prci1g2409 599 Gene3D - 127 171 - -
Prci1g2409 599 MobiDBLite consensus disorder prediction 100 124 - -
Prci1g2409 599 Pfam F-box domain 132 167 IPR001810 GO:0005515
Prci1g2409 599 MobiDBLite consensus disorder prediction 52 83 - -
Prci1g2409 599 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 156 490 - -
Prci1g2409 599 MobiDBLite consensus disorder prediction 1 25 - -
Prci1g2409 599 ProSiteProfiles F-box domain profile. 128 172 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2409 Prci-Chr1 44283259 44287839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2409 - - qsa:O6P43_010562 850.892