Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2350 ATGGGTTGGAAAGCAGCTGAGAAACTAATTCGGCACTGGAAGATTCTCAGAGGGGACAATGCAATGATGATCTGGACCAAGGATAGGGGCAAGATAGGGTTTATTAAGCGCATGATTCACTCTCAGAATCGTGTAATTGTTGAGGGCAAATATCTGAATGAATTCAACCCCCATGGTCCCTATTTCTCAAGTATGTCTGAAACAATCCTGGTCCAGGCTCGAGATCCTGCTAAACTGAATATGGAAATAGAAAATGCTATCAGTGAGAATAAATTAGAAGATACATGGAAGTTACTTGAGCAGCATATGCAAATAGATGGCTTTCCTAGAAAATCTATCGTCAACAAGCTTCTAACCAGTTATGTGGAAAGCCTGGATGTGCAATGGCTTGAAAAAGCTTATGGGTTGGTAGAAAAGGCTATTGAGGAAGGTAAACAGAACTTGTTAGAAAAGGAAGTACTTATGTATCTCTGCTTTGGTCTTGCCAAAGCTGGACTACCAATTCCTGCTTCAACTGTCTTAAGAAAGATGATAGATATGGAGCAATTTCCGCCAGTCACTGCATGGTCTGCAGTTTTGGCCCACATGTCACGAACAGTGGATGGAAGTTATCTTGCTGCTGAGTTGATTCTTGAAATAAGTTATTTGTTCAAGAACAATAGAGTGGATCCACGCAAAAAGAGCAATTCACCTTTGGTAGCTATGAAGCCTGATACTACTGCTTTTAATATTGCTCTGGCAGGGTGTCTGCTGTTTGAGACTACTAGGAAAGCAGAGCAGCTTCTTGACATGATGCCTCAAGTTGGTGTCAAGGCTGATGCAAACTTACTAATAATAATGGCACATGTATATGAGAAGAATGGACGAAGAGAAGAGCTTAAGAAGCTGCAAAGACATATAGAGGAAGCACCTAATCTTACTGATATTCAGTTCCGCCAATTCTTTAATTGTTTGCTCTCTTGCCATTTGAAATTTGGGGACCTAAATTCAACATCAAACATGGTTTTGGAAATGCTAAGGAAATCAAAGGAGGCAAAAAATTCTCTTGCAGCTGCTAAATTTATAACTCATGCACCTGAAATTGATTGTAAATATTCTCCCGGACTAGCTTCCATGCTTAGTTTGAGTGACACTAAGGACTCAGATTGTTTAGAATATGACAAGCCGATGAGAAACACCATCCTGTCTTATGAAGATTTCTCTGGAGATCGGAATTTCTTAAAACTTGAAGCTGAGTCAAAGGCTGTTCTTGGTTCTTTGTTTGCGAAGTTGCAGAGACATGTTGACTTGATTACAACAAAATATGGTATACTCCAGCCAACTGAATCAATTTATGTGAAACTGGTTAAAGGTTTTCTAGAAACTGGCAAAACCAAGGATTTGGCGGAGTTTCTAATCAAGGCAGAAAGAGAAGATTCCCCGCTTTCCAATGATAGCTCAATATTGATTCATGTCATTAATACATGTATTTCACTGGGATGGTTGGATCAAGCACATGACCTTCTTGATGAGATGCGGCTAACTGGAATTAAAGCTGGCCCATCTGTGTATGCCTCTCTCTTGAAAGCCTATTGTCAAGCAAATAGGGCTGCAGAAGTCACTTCACTTTTAAGAGATGCAAGGAAGGATGGTATCCAGCTGGACTCTAGTTCTTATGAGGCAATGATCCAATCCAGGGTGCTTCAGGAGGATACAAGAGGAGCTCTCCGTTTATTCAAAGAGATGAAAGTGGCTAAAATTCCAAAAGTTGGACAAGAAGACTCTATCACGCTGCCTAAAAATTATGTACAGAAAGATGAATCTGGGTTGATGATGAATCTGTTGCAGGAAATCAAAGAAGGACAGAAAGTGAATTATGAGCTTCATGATTGGAATAATGTAATCCATTTTTTCTGTAAGAAGAAACTGATGAAAGATGCTGAAAAGGCTCTGAAGAAGATGAGGAGCCTAGGCCACACACCAAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTATTGGAGGGAACTATCTGGAGGTAACAGAACTCTGGGGTGAGATGAAAGCTCTTAATTCTTCAGTCTCAATGAAGTTTGATCAGGAACTTCTCGATTCAGTGCTATATACATTTGTGAGGGGTGGATTCTTCAGTCGAGCCAATGAAGTTGTGGCAATGATGGAAAAATCTAACATGTTTATTGACAAGTACAAGTATCGGACGCTATTCTTGAAGTATCATAAAACACTTTATAAAGGCAAGGCTCCAAAGTTTCAGACAGTAGCCCAATTAAACAAGAGGGAAGCAGCCCTGGCTTTTAAAAATTGGGTCGGCTTGAGTTGA 2328 0.4021 MGWKAAEKLIRHWKILRGDNAMMIWTKDRGKIGFIKRMIHSQNRVIVEGKYLNEFNPHGPYFSSMSETILVQARDPAKLNMEIENAISENKLEDTWKLLEQHMQIDGFPRKSIVNKLLTSYVESLDVQWLEKAYGLVEKAIEEGKQNLLEKEVLMYLCFGLAKAGLPIPASTVLRKMIDMEQFPPVTAWSAVLAHMSRTVDGSYLAAELILEISYLFKNNRVDPRKKSNSPLVAMKPDTTAFNIALAGCLLFETTRKAEQLLDMMPQVGVKADANLLIIMAHVYEKNGRREELKKLQRHIEEAPNLTDIQFRQFFNCLLSCHLKFGDLNSTSNMVLEMLRKSKEAKNSLAAAKFITHAPEIDCKYSPGLASMLSLSDTKDSDCLEYDKPMRNTILSYEDFSGDRNFLKLEAESKAVLGSLFAKLQRHVDLITTKYGILQPTESIYVKLVKGFLETGKTKDLAEFLIKAEREDSPLSNDSSILIHVINTCISLGWLDQAHDLLDEMRLTGIKAGPSVYASLLKAYCQANRAAEVTSLLRDARKDGIQLDSSSYEAMIQSRVLQEDTRGALRLFKEMKVAKIPKVGQEDSITLPKNYVQKDESGLMMNLLQEIKEGQKVNYELHDWNNVIHFFCKKKLMKDAEKALKKMRSLGHTPNAQTFHSMVTGYAAIGGNYLEVTELWGEMKALNSSVSMKFDQELLDSVLYTFVRGGFFSRANEVVAMMEKSNMFIDKYKYRTLFLKYHKTLYKGKAPKFQTVAQLNKREAALAFKNWVGLS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2350 775 Gene3D Tetratricopeptide repeat domain 81 361 IPR011990 GO:0005515
Prci1g2350 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Prci1g2350 775 Gene3D Tetratricopeptide repeat domain 591 765 IPR011990 GO:0005515
Prci1g2350 775 PANTHER BNAC05G43320D PROTEIN 57 775 - -
Prci1g2350 775 Pfam PPR repeat 485 507 IPR002885 -
Prci1g2350 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Prci1g2350 775 Pfam Pentatricopeptide repeat domain 535 580 IPR002885 -
Prci1g2350 775 CDD KOW_RPL26 14 49 IPR041988 GO:0003723
Prci1g2350 775 Gene3D - 10 80 IPR014722 -
Prci1g2350 775 Gene3D Tetratricopeptide repeat domain 466 590 IPR011990 GO:0005515
Prci1g2350 775 Pfam PPR repeat family 624 667 IPR002885 -
Prci1g2350 775 NCBIfam pentatricopeptide repeat 624 656 IPR002885 -
Prci1g2350 775 SUPERFAMILY Translation proteins SH3-like domain 10 51 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2350 Prci-Chr1 43836858 43841364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2350 481 737 Miscellaneous Gene Families AT4G11690 21.756 1.24e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2350 - - gmx:102661989 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2350 1 43836858 43841364 Prci1g2350 1 43836858 43841364 ECH