Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2346 ATGGACGAGGGGGAAGCGAACAAAGAAGTCGAAGTCGCTCCCGCCCTGATTGCAGTTCACCCAGTCCAGAAGTCCGTTGCCGTTGCTGTTGGACCAAGCCTCCGTGTATTCGACCTTCATGCTGGTTCTGCGGCTTCATTGACTGATGAATCCGGTGGCCCATTTCATAGAGATTCTATTCGGGCAATTCGATTTGGTTCAAAAGGGAGGCTCTTTGTGTCTGCAGGCGATGACAAAACTGTCAAGATATGGTCAGCTGAAAATTGGCGCTGCATTTGTACTGTGTCCTCAGAAAAGAGAGTTAGTGCAGTTGCTGTAAGCAATGATGGTTCTTATGTGTGTTTTGCTGACAAATTCGGTGTTGTCTGGGTTGTGGATCTGGCTGGATATGATGGCGATCAACCATTAGTTGATAAGAAAGCAACCCCACTTCTTTCTCATTATTGTAGTATCATCACTAATTTGGAATTTTCGCCTGATGATCGATGCATTGTTAGTGCTGATCGGGATTTCAAAATCCGTGTTACTAATTTTCCTGACAAGCATTTGAGTGGAGCTCATGAGATACAGAGCTTCTGTCTTGGTCATACAGAGTTTGTTTCCTGCATTGCCTTTGTTCATGATCAGAATTGCCCTCAAGGCCTTCTCATATCTGGTAGCGGTGATTCAACAGTCCGTATGTGGGACACTTCATCGGGAGCACTCCAAGATACCTGTGAGGTTGCGGTTAAGGCAGGAGTTGCAGAGTGTAATGATGAAGCAGAGGAGCACACACATGCTGTGACTGATTTATACACCATCATGGATGGGTTGCTTGTTGCAGTGGCCCTTCAGAGCTTGCAAGGAATAATATTGCTAAGGTGCAACGTTTCTGCTCGAACACTTTCTGTTGCCAAGGTTATTTCTATTTCAGGAGAGGCTTTTGTACCGACTTGCTTGGGAAGCAGCTCCTGCACTGGGATGTTGTGGATGGTAACGGGTGTGTCTAGTCTACCAGGTTCCAGTTATCCCGCCTTAGCTCGCATTCGAGTAATTTCTGGTTTTGATGTTGAACAAGAACCAGCAGTTATTGAAGATGACAAGATTCCTGGGGGCGAGAAATTGCTGGAAACGTTGCAGGGTAGCACATCGGTGGATGAGAATGCTTTCTTGGCTGCAGCTGAAGCTGTCAAGACAGCAATGTGCAATCTATTGATTAAAAAGCAATACTCTGCAGAGAATAGAGAGTCTAAGAAGAGGGCCAGAAATGATAGAAAATTGAAAAAGCAACATAGTTAA 1278 0.4538 MDEGEANKEVEVAPALIAVHPVQKSVAVAVGPSLRVFDLHAGSAASLTDESGGPFHRDSIRAIRFGSKGRLFVSAGDDKTVKIWSAENWRCICTVSSEKRVSAVAVSNDGSYVCFADKFGVVWVVDLAGYDGDQPLVDKKATPLLSHYCSIITNLEFSPDDRCIVSADRDFKIRVTNFPDKHLSGAHEIQSFCLGHTEFVSCIAFVHDQNCPQGLLISGSGDSTVRMWDTSSGALQDTCEVAVKAGVAECNDEAEEHTHAVTDLYTIMDGLLVAVALQSLQGIILLRCNVSARTLSVAKVISISGEAFVPTCLGSSSCTGMLWMVTGVSSLPGSSYPALARIRVISGFDVEQEPAVIEDDKIPGGEKLLETLQGSTSVDENAFLAAAEAVKTAMCNLLIKKQYSAENRESKKRARNDRKLKKQHS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2346 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Prci1g2346 425 SUPERFAMILY WD40 repeat-like 17 275 IPR036322 GO:0005515
Prci1g2346 425 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Prci1g2346 425 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 414 IPR028884 GO:0036265
Prci1g2346 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 94 IPR001680 GO:0005515
Prci1g2346 425 PANTHER WD40 REPEAT PROTEIN 4 13 416 IPR028884 GO:0036265
Prci1g2346 425 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 356 - -
Prci1g2346 425 Gene3D - 100 325 IPR015943 GO:0005515
Prci1g2346 425 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Prci1g2346 425 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Prci1g2346 425 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Prci1g2346 425 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 13 98 - -
Prci1g2346 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Prci1g2346 425 SMART WD40_4 40 85 IPR001680 GO:0005515
Prci1g2346 425 SMART WD40_4 138 177 IPR001680 GO:0005515
Prci1g2346 425 SMART WD40_4 185 229 IPR001680 GO:0005515
Prci1g2346 425 SMART WD40_4 88 126 IPR001680 GO:0005515
Prci1g2346 425 MobiDBLite consensus disorder prediction 406 425 - -
Prci1g2346 425 Gene3D - 15 99 IPR015943 GO:0005515
Prci1g2346 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2346 Prci-Chr1 43812051 43815589 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2346 K15443 - gmx:100809122 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2346 1 43812051 43815589 Prci1g2346 1 43812051 43815589 ECH