Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2254 ATGGCTCCTTCCGAGTACTCTAAGGGTATCAAAGTTGCAGGTAGATCTAGAAATATTGATCTTACAGTTGACCTGTTTAATGAAGCTGCAAACAAGCAAATAAAAACAACAGGTATTTATAATTCGCTGATGGCTGCTCAGATGTTAAATGGTCTTCCTGGGAAATGCCGGTCATTATTTGTGCGGATGAAGATGGTTGAAACTTGTAGCCCTAACGTAATAACCTACAATATTCTTATTTCTGTTTTTGGCCGCTTGATGCTCATAGATCGTATGGAAGCAATATTTGAGGAGCTACATAATTCAGGCCTCTCCCCGAATATAAGCACTTATAATTATTTGATTGCTGGGTATGTTACAGCCTGGAGGTGGGATAGAATGGGAAAAACTTTTCAAGTGCTAAAGTCAAACCCTTTTATACGACACTCATACCTGCTGATGATACGTGGGCATGCTAATTCAGGTAATCTGAAGAAGATGGAAGAGACATATCAGTTAGTGAGGGATTATGTCAATGAGAATGAAATTCCTTTGATCAGGTGCATGATGTGTGCATATAGTAAAAGTTCCGAGCCTGATAGAGTGAAGAAGATACAGGAATTACTGGTGTTGATTCTGGAAAAGGAGTACAGGGCATGGCTAAATGTGTTGTTAATTAGGCTTTATGCACAAGAGCACTCCTTAGAGGAGCTGGAGATCAATGATGCATTTGAGCACAAAGTCTTAGTAAGAACAAGTGGTATAATGAGATGCATCACTGCGACTTATTTTAGGAAAAACTTAGTGGACAGGTTAGAAAATTTTTTGAGGCGTGCTGAATGTTCCAACTGGAAAATTTGCCTCTCCTTATACCGTTGTAAGATGGTCATGTATGGATCACAAAAGCGCTTTGAGGAAATTGGAAGTGTCCTGAATGAGATGGTAGGTGTCAACTTGAGTTTGACAAAGAAAACATTGTGGATTTTGTATAAAGCTTATGTAAGTTGTGATCAATGGTCCAAGGTTGGGAAAATATTGGGACTCATGTGCAAGCATGGATTTGATTTTCCAGTGAGTGCAGTCCCATGGTAA 1071 0.3931 MAPSEYSKGIKVAGRSRNIDLTVDLFNEAANKQIKTTGIYNSLMAAQMLNGLPGKCRSLFVRMKMVETCSPNVITYNILISVFGRLMLIDRMEAIFEELHNSGLSPNISTYNYLIAGYVTAWRWDRMGKTFQVLKSNPFIPXHSYLLMIRGHANSGNLKKMEETYQLVRDYVNENEIPLIRCMMCAYSKSSEPDRVKKIQELLVLILEKEYRAWLNVLLIRLYAQEHSLEELENXNDAFEHKVLVRTSGIMRCITATYFRKNLVDRLENFLRRAECSNWKICLSLYRCKMVMYGSQKRFEEIGSVLNEMVGVNLSLTKKTLWILYKAYVSCDQWSKVGKILGLMCKHGFDFPVSAVPW 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2254 358 NCBIfam pentatricopeptide repeat 74 108 IPR002885 -
Prci1g2254 358 Pfam PPR repeat 39 64 IPR002885 -
Prci1g2254 358 Pfam PPR repeat 144 167 IPR002885 -
Prci1g2254 358 Coils Coil 236 242 - -
Prci1g2254 358 Gene3D Tetratricopeptide repeat domain 216 355 IPR011990 GO:0005515
Prci1g2254 358 Gene3D Tetratricopeptide repeat domain 4 215 IPR011990 GO:0005515
Prci1g2254 358 PANTHER EXPRESSED PROTEIN 3 353 IPR044179 GO:0003729
Prci1g2254 358 Pfam PPR repeat family 71 118 IPR002885 -
Prci1g2254 358 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Prci1g2254 358 Coils Coil 222 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2254 Prci-Chr1 43138439 43139716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2254 40 163 Miscellaneous Gene Families AT4G11690 26.515 5.79e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2254 - - pcin:129290585 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2254 1 43138439 43139716 Prci1g2254 1 43138439 43139716 ECH