Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1821 ATGCTTTACTCCGCCACTTTTCAGGGCTTTATCAGAACCACCGCTTCTGCTTCAACGGCCATGGCCCTCAGGGGTCCCCTTTTCCTCTTACCCCACAGAGCTCGAAGGCTCTCCCTTCTCTCCTTTTCCTTGAGAATTCCTGCACTTAGCTTGAGACATTTTCATGTGGCCCAAAAGATAAGGTCTCCAATAGGGGCTTTAGGCTCCGTTGCGCCTTCCAGGACGACTGAGGTGGATTGGAAGGAGAGTCAAGGTGTGGGCTTTAGGCGGAGGAGCATTGCTTTGCCGTTTTGGCATCAGCAGAGCTCCAGCTATGGTCGTTTTGCTTACCAGGATGTGTCTAGTGATGATCCTGATATGGAGTTGGGGTCTCCTCAGCAACAAATGGGCGGCTCATCCCTTGATAACATTGATGAGTGGAGATGGAAGCTGACCATGCTTCTTCGCAACAAGGATGAGCGAGAAGTGATTTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCATCTCTCAGCTTTAGCAACTAGGATGGGTTTATATAGCCAACAATATGCAAAAGTAGTTGTCTTTAGCAAGGAACCTCTGCCAAATTACAGACCTGATCTGGATGATAAGCGTCCACAGAGGGAGGTTGTCATACCTTTTCGTGTCCATAAAGAAGCAGATTCTCTTCTCAATGCTTATGTTTCTAAAAAGTCTACAAGCTTTGGAGGCTTTTTTGATGCATCCTTGCATAGATCAAGCAGTGCTGGCATTCCTGCAGATGAAGGAATTCTCAAGGAGCCAGAGCCCTTGGCACAGAATAGTGTTGTCAGGGAGAAAATCTTTCTACGAAAAAGTTTGCAACTGCGTAATCAACAAGAAGATTGGCAGGAGTCTCCTGAAGGACAAAAGATGCTTGGATTTCGTAGAACTCTTCCTGCATTCAAAGCAAAGGATGAATTATTGAAAGCCATTTCAGAGAACCAGGTTGTTGTGGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCACAATATATATTAGAGTCTGAGATTGAAGCTGCACGTGGTGCTGCCTGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCAATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAAAAATTGGGAGAATCTGTTGGTTACAAGGTTCGGCTGGAGGGTATGAAAGGAAGGGATACTCGTCTTCTTTTTTGCACTACAGGTGTATTGTTGAGGAGACTGCTTGTGGACCGAAATCTAAAAGGTGTGACTCATGTTGTTGTTGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTCCTTGTTGTGCTGAAGGATCTTCTCCCACGCCGTCCAGACCTTAGGTTAATTTTGATGAGTGCAACCTTAAACGCCGAGCTTTTTTCTTCCTACTTTGGTGGGGCTCCAACTTTACATATACCTGGTTTTACGTATCCAGTTCAAGCACATTTTCTTGAGGATATTCTGGAGATGACTCAATATCGGTTGACACCTTATAATCAAATTGATGATTATGGTCAAGAGAAGACATGGAAAATGCAGAAACAGGTTCAAGCTTTGAAAAAAAGGAAGACACAGATTGCTTCTGTCGTTGAGGATGCACTTGAAGCTGCTGATTTCAAGGAATACAGCTTACGCACCCAGGAGTCACTATCCTATTGGAGTCCTGATTCAATTGGTTTTAACCTTATTGAACATGTTCTTTGCCACATTGTCAAGAATGAAAAGCCAGGTGCTATTTTGGTTTTTATGACTGGTTGGGATGACATAAATTGTTTGAAGGATCAGCTCCAAGCTCATCCTCTTTTGGGTGACCCAAGCAAAGTATTGCTTCTTGCATGCCACGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGAGTGAGGAAAATAGTTCTTGCCACCAATATGGCTGAGACTAGTATTACCATAAATGATGTTGTCTTTGTGATTGATTGTGGGAAAGCAAAAGAGACATCTTATGATGCACTAAACAATACTCCTTGTTTACTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGTCGTGTTCAACCAGGCGAATGTTACCATCTTTATCCGAGATGCGTTTATGATACTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCCTATGTCTTCAAATCAAAAGTCTAAACCTTGGAAGCATTTCAGAATTCCTATCCAGAGCTCTGCAACCACCAGAACCTCTGTCGGTTCAAAACGCTGTTGAATATTTGAAGACTATTGGGGCCTTGGACGAAGATGAAAATCTGACAGTTTTAGGTCGTAACTTGTCAATGCTCCCTGTAGAGCCTAAACTTGGCAAGATGCTTATCTTAGGAGCTATCTTCAACTGTTTAGATCCCATAATGACTGTTGCTGCTGGTCTTAGTGTAAGGGATCCATTTATGACGCCATTTGACAAGAAGGACCTTGCAGAGTCTGCCAAGGCCCAGTTTGCTGCTGGTGCCTATAGTGATCATCTTGCACTTGTTCGGGCTTATGAGGGTTGGAGCAATGCAGAAGCACAGAAAGAAGGTTATGAGTACTGTTGGAGAAATTTCCTTTCTTCACAAACACTTAGAGCTATTGACTCTCTTCGAAAGCAATTTTTTTACTTGCTCAAAGATATAGGTTTGGTTGATCATAATACTGACTATTGCAATGCATGGAGTCATGATGAGCATCTGGTCCGAGCGGTAATTTCAGCTGGTTTGTTTCCTGGAGTATGCTCTGTTGTGAACAAAGAGAAGTCAATAGCATTGAAAACAATGGAGGACGGTCAAGTTCTTCTGTATGCAAACTCTGTAAATGGCGCTGTACCCAAAATTCCTTTCCCGTGGCTGGTATTCAATGAAAAGGTGAAGGTGAATTCAGTATTCATCCGGGATTCAACCGGTATATCTGATTCAATGCTGCTCTTATTTGGTGGGAATGTTTCCAGAGGTGGACTGGATGGTCACCTGAAAATGCTGGGGGGGTATTTGGAATTTTTCATGAATCCTGCATTAGCTGAGACTTACTTGAGCCTGAAGAAGGAGCTGGAGGAATTAATACATAGAAAACTTCTGGATCCCAAGTTGGATATACAATCATGTGATGGGCTTCTTTCAGCTGTCAGATTGCTGGTATCGGAGGACCAGTGTAGTGGAAAATTCGTCTTTGGTAGTCGGGTGCTATCACCATCAAATAAGGCAAAAGATTCGAAAAGTGTTTCTATCGAGTGCAGTAACTATAAAAACCAGCTGCAAACGTTGCTTGCCAGGGCTAGACATGAACCACCAACTTACAAAACAAAACAACTTGAAAACAACCGGTTCTGCTCTACTGTCATATTCAATGGCTTGAATTTTGTTGGCCAGCCTTGCAGCAGCAAGAAGCAAGCAGAGCAGGACGCTGCTTCGGAGGCTCTTCTGTGGTTAAAAGGGAATACACATTCATCTAGCGATGATATTGACCAGCTTCAATCATTGCTTGGCAGGGATCGGCATAAACCATCAAATAAGGCAAAATGCTCCAAAAGCAGTTCTATTGAGAGCGGTGATTGTAAAGACCAGCTGCAAACATTGCTTGTCAGGGCTGGACATGAACCACCAACTTACAAAACAAAACAACTGGGAAATCAGTTCCGCTCTACTGTCATATTCAATGGCTTGAATTTTGTTGGTCACCCTTGCAACAGCAGGAAACAAGCAGAAAAGGATGCTGCTGCTGAGGCTCTTTTATGGTTAAAGGGTGATCCGCATTCTAATCATAATGATGATGATCGTATGGCTTTGCCTTTCAAAAAGGGAAATAAAAGAAGCAAATTTTTCTGA 3900 0.4331 MLYSATFQGFIRTTASASTAMALRGPLFLLPHRARRLSLLSFSLRIPALSLRHFHVAQKIRSPIGALGSVAPSRTTEVDWKESQGVGFRRRSIALPFWHQQSSSYGRFAYQDVSSDDPDMELGSPQQQMGGSSLDNIDEWRWKLTMLLRNKDEREVISREKKDRRDFEHLSALATRMGLYSQQYAKVVVFSKEPLPNYRPDLDDKRPQREVVIPFRVHKEADSLLNAYVSKKSTSFGGFFDASLHRSSSAGIPADEGILKEPEPLAQNSVVREKIFLRKSLQLRNQQEDWQESPEGQKMLGFRRTLPAFKAKDELLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVVVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTLHIPGFTYPVQAHFLEDILEMTQYRLTPYNQIDDYGQEKTWKMQKQVQALKKRKTQIASVVEDALEAADFKEYSLRTQESLSYWSPDSIGFNLIEHVLCHIVKNEKPGAILVFMTGWDDINCLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKTIGALDEDENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPIMTVAAGLSVRDPFMTPFDKKDLAESAKAQFAAGAYSDHLALVRAYEGWSNAEAQKEGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVDHNTDYCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLYANSVNGAVPKIPFPWLVFNEKVKVNSVFIRDSTGISDSMLLLFGGNVSRGGLDGHLKMLGGYLEFFMNPALAETYLSLKKELEELIHRKLLDPKLDIQSCDGLLSAVRLLVSEDQCSGKFVFGSRVLSPSNKAKDSKSVSIECSNYKNQLQTLLARARHEPPTYKTKQLENNRFCSTVIFNGLNFVGQPCSSKKQAEQDAASEALLWLKGNTHSSSDDIDQLQSLLGRDRHKPSNKAKCSKSSSIESGDCKDQLQTLLVRAGHEPPTYKTKQLGNQFRSTVIFNGLNFVGHPCNSRKQAEKDAAAEALLWLKGDPHSNHNDDDRMALPFKKGNKRSKFF 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1821 1299 Pfam Double-stranded RNA binding motif 1211 1271 IPR014720 -
Prci1g1821 1299 Pfam Double-stranded RNA binding motif 1106 1168 IPR014720 -
Prci1g1821 1299 MobiDBLite consensus disorder prediction 1276 1290 - -
Prci1g1821 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 746 IPR001650 -
Prci1g1821 1299 SMART DRBM_3 1210 1272 IPR014720 -
Prci1g1821 1299 SMART DRBM_3 1106 1169 IPR014720 -
Prci1g1821 1299 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1105 1170 IPR014720 -
Prci1g1821 1299 CDD SF2_C_RHA 561 714 - -
Prci1g1821 1299 Gene3D - 265 484 IPR027417 -
Prci1g1821 1299 CDD DEXHc_RHA-like 322 482 - -
Prci1g1821 1299 Gene3D - 565 724 IPR027417 -
Prci1g1821 1299 SMART helicmild6 600 706 IPR001650 -
Prci1g1821 1299 Pfam Helicase associated domain (HA2) 769 842 IPR007502 GO:0004386
Prci1g1821 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 903 IPR027417 -
Prci1g1821 1299 SMART ultradead3 304 492 IPR014001 -
Prci1g1821 1299 Gene3D - 748 851 - -
Prci1g1821 1299 PANTHER ATP-DEPENDENT RNA HELICASE 248 1049 - -
Prci1g1821 1299 FunFam DExH-box ATP-dependent RNA helicase DExH3 568 724 - -
Prci1g1821 1299 Pfam DEAD/DEAH box helicase 313 467 IPR011545 GO:0003676|GO:0005524
Prci1g1821 1299 Gene3D - 1090 1173 - -
Prci1g1821 1299 Gene3D - 1189 1274 - -
Prci1g1821 1299 Pfam Helicase conserved C-terminal domain 574 705 IPR001650 -
Prci1g1821 1299 MobiDBLite consensus disorder prediction 1185 1207 - -
Prci1g1821 1299 SUPERFAMILY dsRNA-binding domain-like 1104 1171 - -
Prci1g1821 1299 SMART ha2_5 768 859 IPR007502 GO:0004386
Prci1g1821 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 483 IPR014001 -
Prci1g1821 1299 SUPERFAMILY dsRNA-binding domain-like 1209 1280 - -
Prci1g1821 1299 FunFam Putative ATP-dependent RNA helicase DHX36 748 852 - -
Prci1g1821 1299 FunFam DExH-box ATP-dependent RNA helicase DExH3 260 484 - -
Prci1g1821 1299 MobiDBLite consensus disorder prediction 1276 1299 - -
Prci1g1821 1299 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 925 1007 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1821 Prci-Chr1 38588023 38601251 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1821 K14442 - qsa:O6P43_008523 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1821 1 38588023 38601251 Prci1g1821 1 38588023 38601251 ECH