Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0287 ATGGGTTCTGGTTCCAAAGTTGGGAATAGCAGTCTTGATTACTCCTTCAAGGTTTTGCTGATTGGCGATTCTGGGGTTGGCAAGAGCAGTCTTCTTCTCAGCTTCATCTCTAACTCTGTTCACGATCTCTCTCCAACTATCGGTGTGGACTTCAAGATCAAGTTCCTTACAGTTGGTGGTAAAAGATTGAAACTTACTATTTGGGACACAGCGGGCCAGGAGAGGTTTGGAACAGTGATAAGCTCTTACTACAGAGGTGCGCATGGAGTCATTCTTGTCTATGATGTGACACGGCGTGAAACATTTAAAAACTTGAAGGACTTATGGGTGAAAGAAGTTGAACTCTACAGCACTAATCCTGAGTGCATCAAAGTTCTAGTTGGGAATAAGGTGGATAAGGATAGTGAAAGAGTTGTAACCAAGGAAGAGGGTATGGCTCTTGCACAGAAACATAGATGTTTGTTCCTAGAGTGTAGTGCTAAAACTAGAGAAAACGTTCAGCAATGCTTTAATGGTCTCTCCTTGAAGATATTAGAGGTTCCGAGTTTACGGGAAAAGGGGTCTTTAGTAGTGAAGAGACAAAAACAAATGCACACGCGTGAGAGGATGCATCGAGGTGGAGGCTGTTGTTTAGAGTAA 639 0.4304 MGSGSKVGNSSLDYSFKVLLIGDSGVGKSSLLLSFISNSVHDLSPTIGVDFKIKFLTVGGKRLKLTIWDTAGQERFGTVISSYYRGAHGVILVYDVTRRETFKNLKDLWVKEVELYSTNPECIKVLVGNKVDKDSERVVTKEEGMALAQKHRCLFLECSAKTRENVQQCFNGLSLKILEVPSLREKGSLVVKRQKQMHTRERMHRGGGCCLE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0287 212 Gene3D - 7 206 IPR027417 -
Prci1g0287 212 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Prci1g0287 212 NCBIfam small GTP-binding protein domain 14 171 IPR005225 GO:0005525
Prci1g0287 212 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Prci1g0287 212 SMART ran_sub_2 21 211 - -
Prci1g0287 212 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Prci1g0287 212 PANTHER RAS-RELATED PROTEIN RAB 15 186 - -
Prci1g0287 212 SMART rab_sub_5 16 180 - -
Prci1g0287 212 CDD Rab18 16 177 - -
Prci1g0287 212 SMART ras_sub_4 13 180 - -
Prci1g0287 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 192 IPR027417 -
Prci1g0287 212 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Prci1g0287 212 ProSiteProfiles small GTPase Ras family profile. 10 211 IPR001806 GO:0003924|GO:0005525
Prci1g0287 212 FunFam Ras-related protein RABC1 9 210 - -
Prci1g0287 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Prci1g0287 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Prci1g0287 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Prci1g0287 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Prci1g0287 212 PRINTS Transforming protein P21 ras signature 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0287 Prci-Chr1 2714955 2719981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0287 15 170 EF-hand Containing Proteins AT5G27540 28.395 2.39e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0287 K07910 - gmx:100809867 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g0287 1 2714955 2719981 Prci3g2960 3 41243547 41246281 CCT
Prci1g0287 1 2714955 2719981 Prci1g0287 1 2714955 2719981 ECH