Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0976 ATGGGTACTGCATCTGCTAGATACCCATTTGGACTTGCCGTTCACTCCATCCAGAAACTGGATAGCTCAAGCTCCGAGTTTCCTCTTAATGTTGACGTTTCAAGAATTAGTTTGTGCCCAAGCTCTGTGTCCTCCACAGCGTCAAAGGGTTTTGTAGACCGTATATGTGCACGTCCTAATATTGATGATTTCAGCTGGGAGAAAGTGCCGACACCCATGCTTGATGCAATTGATAGTCCTCTTTGTTTGAAGAACTTATCTCTTAAGGAACTCAAGCAACTGGCAGGTGAAATCCGTTTGGAATTGTCTATGATGATGTTAAATGCACACATTTCATTTGGAGCAAGTTTGGCAGTGGTGGAACTGACCGTTGCAATACACCATGTTTTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGAGATCAAACATATGCACATAAGATTCTTACAGGAAGGAGATCCCTCATGAAGACAGTGAGACAAAAGAATGGCCTTTCTGGATTTACGTCTCGATCTGAGAGTGAATATGATGCATTCGGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGTATGGCAGTTGCACGGGATATGAAGGGGAGGCGAGAACGTGTAGTTGCAATTATCAGCAATTGGACAACTATGGCTGGTCAAGTTTATGAAGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTCTGAATGACTGCCGTTACTCTTTACATCCAAAAGTTGAGGAGGGCCCAAAGGCATCAATCAATGCATTATCTGGTACTCTAAGCAGGATCCAGTCCAGTAAATCTTTCCGAAGGTTTAGAGAAGTTGCTAAAGGCGTTACAAAACGAATTGGTGGAGGTATGCATGAACTAGCAGCTAAAGTTGATGAATTTGCACGTGGTATGATGGGTCCTCTAGGATCCACTCTTTTTGAGGAGCTTGGGTTGTATTACATTGGCCCTGTGGATGGACACAACATTGAGGAGCTAATTTGTGTTCTAGAAGAAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGATTCATGTAATAACTGGTGAAAACCAAGGAGTGGAATATAATCTGAGTACAGTAGCAGAAAAGCAGCAGGACGGTTCTAGCAGCTTTGATTCATTTCATCAAGCTGGTCAACCTCGGACATATAGTGATTGCTTGGCAGAAACTTTGGTCATGGAAGCAGAGAAAGATAAAGATATTGTGGTAGTTCATGCAGGACCTACGATGGAACCATCACATCAACTGTTTCGAGAAAAAATGTTAGATAAGTTTTTCGATGTGGGTATGGCTGAGCAACATGCAGTTACATTTGCATCTGGTTTGGCATGTGGTGGATTGAAGCCTTTTTGCATAATACCTTCTTCCTTCCTTCAGAGAGCTTATGACCAAGTGATCCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGCGGAGCATTTGATATAGCGTTCATGTCATGTTTGCCAAATATGATAGTCATGGCACCATCTGATGAGGTTGAGCTTGTGCACATGGTGGCTACTGCTAGTCATGTCAATGATCGGCCAATTTGCTTCCGGTATCCAAGAGGTGCTATAATTAGGAGCAACTGCGCTGCATGCAATGGAGTACCCATTGAGATTGGAAAAGGAAGAATTATTGTTGAAGGAAAAGACGTTGCTTTACTGGGATACGGATCAATGGTTGAGAACTGCCTAAAAGCCCACACACTTCTTTCAAAGCTAGGGATCGAGGTCACAGTTGCTGATGCAAGGTTCTGCAAGCCACTGGACATCAGTCTTCTCAGGCGGCTTTGTGAGAACCATTCCTTCCTGATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCTCATGTTGCCCAATTTTTCGCTCTTGATGGACAGCTTGATGGAAAAATTAAGTGGCGACCTATTGTCTTACCGGACAGTTACATAGAGCATGCATCACCAAACGAGCAGCTTGATCAGGCAGGACTGACTGGACACCACATTGCTGCCACAGCTTTGAGCTTGCTTGGTCGTACCCGCGAAGCCCTCCTTTTTATGTGTTCATGA 2142 0.4393 MGTASARYPFGLAVHSIQKLDSSSSEFPLNVDVSRISLCPSSVSSTASKGFVDRICARPNIDDFSWEKVPTPMLDAIDSPLCLKNLSLKELKQLAGEIRLELSMMMLNAHISFGASLAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTVRQKNGLSGFTSRSESEYDAFGAGHGCNSISAGLGMAVARDMKGRRERVVAIISNWTTMAGQVYEAMSNAGYLDSNMVVILNDCRYSLHPKVEEGPKASINALSGTLSRIQSSKSFRRFREVAKGVTKRIGGGMHELAAKVDEFARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLEEVASLDSMGPVLIHVITGENQGVEYNLSTVAEKQQDGSSSFDSFHQAGQPRTYSDCLAETLVMEAEKDKDIVVVHAGPTMEPSHQLFREKMLDKFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDIAFMSCLPNMIVMAPSDEVELVHMVATASHVNDRPICFRYPRGAIIRSNCAACNGVPIEIGKGRIIVEGKDVALLGYGSMVENCLKAHTLLSKLGIEVTVADARFCKPLDISLLRRLCENHSFLITVEEGSIGGFGSHVAQFFALDGQLDGKIKWRPIVLPDSYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALLFMCS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0976 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 454 IPR029061 -
Prci15g0976 713 Gene3D - 66 366 - -
Prci15g0976 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Prci15g0976 713 CDD TPP_PYR_DXS_TK_like 399 551 - -
Prci15g0976 713 Pfam Transketolase, pyrimidine binding domain 395 553 IPR005475 -
Prci15g0976 713 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 699 IPR005477 GO:0008661|GO:0016114
Prci15g0976 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 387 554 IPR029061 -
Prci15g0976 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 702 IPR005477 GO:0008661|GO:0016114
Prci15g0976 713 Gene3D - 570 701 IPR009014 GO:0003824
Prci15g0976 713 CDD TPP_DXS 113 363 IPR005477 GO:0008661|GO:0016114
Prci15g0976 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 47 708 IPR005477 GO:0008661|GO:0016114
Prci15g0976 713 Gene3D - 392 562 - -
Prci15g0976 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Prci15g0976 713 SMART Transket_pyr_3 392 557 IPR005475 -
Prci15g0976 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
Prci15g0976 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0976 Prci-Chr15 6138081 6144569 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0976 K01662 - jre:109001801 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0976 15 6138081 6144569 Prci15g0976 15 6138081 6144569 ECH