Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0862 ATGGAAGTTTCACGCACAAAGTCACTGATGGGAACGGCAACTAGAAATCATGTTCTTAGAGAAATGGAAAATCATTTCGTCCCTGCTTTGAGCAACTGTATAAAAATAGTGCAGCTGAAGAAAATCCATGCTTGCATCGTCAAGCTATCGTTATCACAGAGCAACTTCTTGGTGACAAAAATGTTAGATGTATGCGACAATTGTGGCGATACAGATTACGCTGCCCTGCTTTTCCAACAACTAGCTGCGCCAAACGTGTTTTCCTACAACGCGATCATCAGAGCCTACTCCCACAACCACCAATATAGACTCGCAATCAGTATGTTCAAGCAAATGATGAGACATCCACGGAAATTAGCAGAAAATCCTATTTCGCCAGATAGATTCACATTCCCATTTTTGATAAAGTCATGTGCAGGTCTTTTATGTCATTGTCTTGGCCAGCAAATACACGCGCAGCTATGTAAGTTTGGGACCGATTCCCTTTGTATAACGGAGAACGCAATGATAGATATGTATACGAAATGTGATGATTTGACTAATGCATACAAAGTGTTCCAGCTAATGACTGACCGAGATGCAATTTCCTGGAATAGCTTAATCTATGGACACGCACGATTGGGCCAGATGGAGAGTGCAAAAGCTCTGTTTGACGAAATGCCTTGTAGAACAATTGTTTCTTGGACAACAATGATTACTGGGTACGCTAGAGTTGGCTGCTATTCTCATGCATTAAAATTTTTTCGCGGAATGCAGATGGTTGGTATTGAACCAGATGAGATCAGTATCGTCTCTGCTTTACCTGCCTGTGCACATCTAGGAGCTCTTGAGGTTGGGAAATGGATACACATGTACTCTGATAAGAATGAGTTTTCCAAGAAGACTAGCATTTGCAACGCACTAATTGAAATGTACAACAAGTGTGGTTGTGTTGATCAAGCTCGGAACTTGTTTGATCAATTAGTTGAGCGGGATGTGATTTCTTGGAGCACCATGATTGGAGGACTGGCCAATAATGGTAAAGCTCATGAAGCACTCGAACTCTTCAGAGATATGGAGAAAGCACAAGTGGTTCCAAATGCAATAACTTTTCTAGGAGTCTTAACAGCCTGTACACATGCAGGATTATGGAAAGAGGGATTGAAATGTTTCGATTCAATGAGAGAGGATTACCGTATAGAGCCAGAGGTAGAGCACTATGGTTGCTTAATTGATCTTCTAGGACGCTCGGGACGCCTTGCTCAGGCTCTAGACACGATAATGAAGATGCCAGTAAAGCCAGATTCGAGGATATGGAACTCTCTTCTAAGCTCTTGCAGGATTCATCACAATCTTGATATCGCTATTATTGCAATGGAGCACCTTCTGGAGCTTGAACCAGATGAATCTGGGAGTTATGTTTTGCTTGCTAACATGTATGCGGAGCTTGGAAAGTGGGAAGATGTGTCTAGCATTAGGAAATTCATACGAAGCAAGAGAATTAAGAAAACTCCAGGATGCAGTTTGATTGAGGTTGGCAATGTGGTTGAAGAGTTTGTATCAGGCGATGATTCAAAGCCCTTCTCAAAAGAGATCTTCTGGATCCTCGACGTGCTGGCTCTGCAGCAAAACAGAAGTAATGACGTGATGGAATATGAACTGGAGCACACAGATGGAGCTTTGCGTTCGGCTGTAAGTTTCAGTTTTAATGGCGTCTCCTCTTCTAGGAGTATTAAATCGATGAGAAGTAACCATAAGATAGAAAGCCAATGTATGATTTCAGAAGGAACTTCCTAA 1776 0.4206 MEVSRTKSLMGTATRNHVLREMENHFVPALSNCIKIVQLKKIHACIVKLSLSQSNFLVTKMLDVCDNCGDTDYAALLFQQLAAPNVFSYNAIIRAYSHNHQYRLAISMFKQMMRHPRKLAENPISPDRFTFPFLIKSCAGLLCHCLGQQIHAQLCKFGTDSLCITENAMIDMYTKCDDLTNAYKVFQLMTDRDAISWNSLIYGHARLGQMESAKALFDEMPCRTIVSWTTMITGYARVGCYSHALKFFRGMQMVGIEPDEISIVSALPACAHLGALEVGKWIHMYSDKNEFSKKTSICNALIEMYNKCGCVDQARNLFDQLVERDVISWSTMIGGLANNGKAHEALELFRDMEKAQVVPNAITFLGVLTACTHAGLWKEGLKCFDSMREDYRIEPEVEHYGCLIDLLGRSGRLAQALDTIMKMPVKPDSRIWNSLLSSCRIHHNLDIAIIAMEHLLELEPDESGSYVLLANMYAELGKWEDVSSIRKFIRSKRIKKTPGCSLIEVGNVVEEFVSGDDSKPFSKEIFWILDVLALQQNRSNDVMEYELEHTDGALRSAVSFSFNGVSSSRSIKSMRSNHKIESQCMISEGTS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0862 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 223 IPR002885 -
Prci15g0862 591 Gene3D Tetratricopeptide repeat domain 297 524 IPR011990 GO:0005515
Prci15g0862 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Prci15g0862 591 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 537 IPR046960 GO:0003723|GO:0009451
Prci15g0862 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Prci15g0862 591 Pfam PPR repeat 195 222 IPR002885 -
Prci15g0862 591 Pfam PPR repeat 167 192 IPR002885 -
Prci15g0862 591 Pfam PPR repeat 399 424 IPR002885 -
Prci15g0862 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Prci15g0862 591 SUPERFAMILY TPR-like 178 481 IPR011990 GO:0005515
Prci15g0862 591 Gene3D Tetratricopeptide repeat domain 2 145 IPR011990 GO:0005515
Prci15g0862 591 Gene3D Tetratricopeptide repeat domain 147 280 IPR011990 GO:0005515
Prci15g0862 591 Pfam E motif 442 504 IPR046848 -
Prci15g0862 591 FunFam Pentatricopeptide repeat-containing protein chloroplastic 149 294 - -
Prci15g0862 591 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 298 527 - -
Prci15g0862 591 NCBIfam pentatricopeptide repeat 195 221 IPR002885 -
Prci15g0862 591 NCBIfam pentatricopeptide repeat 327 361 IPR002885 -
Prci15g0862 591 NCBIfam pentatricopeptide repeat 226 260 IPR002885 -
Prci15g0862 591 NCBIfam pentatricopeptide repeat 297 326 IPR002885 -
Prci15g0862 591 NCBIfam pentatricopeptide repeat 87 114 IPR002885 -
Prci15g0862 591 SUPERFAMILY TPR-like 100 332 IPR011990 GO:0005515
Prci15g0862 591 Pfam PPR repeat family 324 371 IPR002885 -
Prci15g0862 591 Pfam PPR repeat family 84 139 IPR002885 -
Prci15g0862 591 Pfam PPR repeat family 224 270 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0862 Prci-Chr15 5549319 5551182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0862 58 547 Glycoside Hydrolase AT3G49170 31.976 1.24e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0862 - - pcin:129294792 1182.16