Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0809 ATGGAGGACGCTGCGAATTTTCCCAACTCCGGCAATTTATCTCGTAAAGTAGTCGCCGTAGCCGCCGGCGAAGCACATACTCTGGCTCTAACCGGCGATGGGTGTGTATATTCTTGGGGAAGAGGAATATTGGGGCGGCTTGGGCGAGGCTCAGAAGAGGACGAACTTTTCCCTGTGCAGGTCAAGTTTGAGAACCCCAATACATCAGGAGACACTAATAAAATTGTCGGAATTGCTGCCGGGGCCTATCATAGTCTTGCTCTCGCAGATGATGGATCAGTCTGGTGCTGGGGTTACAATATCTATGGTCAACTTGGTATTAATGAAGAGGACTCCCCTGCCTCTAGTGGAGATAAGTCTCTAGTGCCCTGCCTATTGAACAAGTTTCTTGAGTTGCAACCTCCCAACTCTTCAACAGACACGCCAGAAGAAGAAAGTAAGGCATCCCTAAAGATATGTTCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCTTGGGGCCCTATGGATGTGGGGAAACTGTCCACAGAAAAGCAAAGAAGGAGGTTTCTCTCTTGTGAGCAGTTTCATTCCCACACCAGTATGGGATTTTCACGGTCATACTGTTGTCAAGGTTGCGTGTGGAAATGAGCATGTTGTGGCACTGGTTACTGCAGGAGAGTCATATGTAGGTGATGACCTCGTGTGCTACTCTTGGGGTAATAACAACCATGGTCAATTAGGCTTGGGGGATAGGGAGAGCAGATCAAATCCAGAAGTCATAAAAGCATTTGACCAGGAGTCCCCATGGGCAATTTATGAGGTAGCTTGTGGTGCCTTTCACACTGCTTTGCTCACTCGCAAAAAGAGTCCCAATGACACATCAGCAAGCATGTGCTGGACGTTTGGCCTTGGGGATAATGGGCAACTTGGGCATGGAACCACACAAAGCGAATTGCTTCCTAGGCCTGTTAAAGAATTGCCACAAAATGCACATCTAATTTCAGTTGACTGTGGCTTGTTTCATACTAGTGTTGTTTCATCAGCCGGAGATGTCTGGTCATGGGGAATGGAGAAGGGCCTTGGTCTGTGCCCCGATGCTAGTTTTACTGGAACTGATTCCGGGGACGCGCTCTCTCCCCTTGTTATCTCGTGCACGCCATATCAGCCTAGGTTTCCAGAGCCAGTCCAAGTTGCTTGTGGAGCTGCGCATACTGTTATTGTTGCACAGGAGGGATATAAGATTTGGTCTTGGGGGAGGGGAAGGAGTGGGGTTCTGGGAAATGGCAAGGCAGTGGATTTTTACACTCCCACACTGGTGTTATGGCCTCCGCTGATAGAGGATTTCAGGCAAGAGGAGCTGAAGAGTACTGGAGAGCAAGAAAAGATGACAGAAAAAGAGACTGAAGCAGTGACTGAAATAGATGAGAAATTAGCCTCAGCATTGAATGAACTGAAGCTGCTTCAGACGAGGCTTTCTGTGATGGAAAGATATGCCAGTATACTTCATGGTTCAATATTTGGAAAACCTTTCGATGAGCAAGATATCCCGTTGTCGTTAAGGAACTCAGGTGCCTTTGACATTGCTAAGGAATGGGAGAACATGTTAGAGGAAGCAGATCATGGCAAGCTAACTAGGTTGGAAATGTTCTACAGAAACATGCTTGCTGGTGTGAAAGATAAACTAACGAAGAGAAGGATCAGGGAGATTATAAAGGAATGCCTCCACTCTTCAGATTTTGCAAAATGA 1737 0.4704 MEDAANFPNSGNLSRKVVAVAAGEAHTLALTGDGCVYSWGRGILGRLGRGSEEDELFPVQVKFENPNTSGDTNKIVGIAAGAYHSLALADDGSVWCWGYNIYGQLGINEEDSPASSGDKSLVPCLLNKFLELQPPNSSTDTPEEESKASLKICSVKAGGMMSLAIDNLGALWMWGNCPQKSKEGGFSLVSSFIPTPVWDFHGHTVVKVACGNEHVVALVTAGESYVGDDLVCYSWGNNNHGQLGLGDRESRSNPEVIKAFDQESPWAIYEVACGAFHTALLTRKKSPNDTSASMCWTFGLGDNGQLGHGTTQSELLPRPVKELPQNAHLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASFTGTDSGDALSPLVISCTPYQPRFPEPVQVACGAAHTVIVAQEGYKIWSWGRGRSGVLGNGKAVDFYTPTLVLWPPLIEDFRQEELKSTGEQEKMTEKETEAVTEIDEKLASALNELKLLQTRLSVMERYASILHGSIFGKPFDEQDIPLSLRNSGAFDIAKEWENMLEEADHGKLTRLEMFYRNMLAGVKDKLTKRRIREIIKECLHSSDFAK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0809 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Prci15g0809 578 SUPERFAMILY RCC1/BLIP-II 12 321 IPR009091 -
Prci15g0809 578 Coils Coil 467 487 - -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 169 221 IPR000408 -
Prci15g0809 578 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
Prci15g0809 578 Pfam Regulator of chromosome condensation (RCC1) repeat 233 281 IPR000408 -
Prci15g0809 578 Pfam Regulator of chromosome condensation (RCC1) repeat 91 165 IPR000408 -
Prci15g0809 578 Pfam Regulator of chromosome condensation (RCC1) repeat 296 341 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 404 425 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 75 88 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 335 353 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 94 110 IPR000408 -
Prci15g0809 578 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 168 IPR000408 -
Prci15g0809 578 SUPERFAMILY RCC1/BLIP-II 267 436 IPR009091 -
Prci15g0809 578 Gene3D - 4 227 IPR009091 -
Prci15g0809 578 Gene3D - 228 475 IPR009091 -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 293 345 IPR000408 -
Prci15g0809 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 346 407 IPR000408 -
Prci15g0809 578 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 128 - -
Prci15g0809 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 284 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0809 Prci-Chr15 5173994 5177203 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0809 - - pcin:129294410 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0809 15 5173994 5177203 Prci15g0809 15 5173994 5177203 ECH