Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci15g0807 | ATGGATTCTGCAACCCCCTCTCCTCCCTTCTCCCACCCCCAGCCCATCTCCGATCGCATCCTCCGCGCTCTCCGCCACCCTCTCCTCCTCCTCCACCGCTCCCACTCCTCCTTCTTCATTCTTGGCGCCACCGCTAATGTCTACACCGTCACCCTCTCCTCCCTCCCCTCCTGCTCCTGCCCCGACCGCACTTCCCCTTGCAAGCACATCCTCTTCGTTCTCATTCGAGTACTCGGCCTCCCCCCCGATCACTTCTCCCTCCGCCGCCGTACCATCCGCCCCTCCCAGCTCCGCCGCCTTCTTGACCTCCCCACCCTCCCCGACGCCCTCGCCGGTGCCTCCCTCCGCCAGAGGTTTCACCAGCTTTTCTTCAGCGAAAGGCAGGAGCCCCGTGTAGAGGTGGAGGATGGCACCTCATGCCCGATTTGTCTGGAGGAAATCGGGAAGGATGACGAGGTCGTCGCCTGTGGAACGTGCCGGAATCCCATTCATGATGAATGTTTGGTGAAGTGGAAGAGAAGCAGGGGGCGGAGAATGACTAGTTGCGTGATTTGTAGGGCAAGATGGAGGGGCACGAATGATCAGGATCAGTATCTAAATCTCTCTGCTTACATTAGTCAGGACGACCCAGCCGAGACCAGTGGGCGTCCCTGCGCCTGTTAA | 663 | 0.6033 | MDSATPSPPFSHPQPISDRILRALRHPLLLLHRSHSSFFILGATANVYTVTLSSLPSCSCPDRTSPCKHILFVLIRVLGLPPDHFSLRRRTIRPSQLRRLLDLPTLPDALAGASLRQRFHQLFFSERQEPRVEVEDGTSCPICLEEIGKDDEVVACGTCRNPIHDECLVKWKRSRGRRMTSCVICRARWRGTNDQDQYLNLSAYISQDDPAETSGRPCAC | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci15g0807 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 203 | IPR013083 | - | |
| Prci15g0807 | 220 | Pfam | Ring finger domain | 139 | 186 | IPR001841 | - | |
| Prci15g0807 | 220 | SUPERFAMILY | RING/U-box | 132 | 190 | - | - | |
| Prci15g0807 | 220 | PANTHER | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 | 6 | 196 | IPR039903 | GO:0061630 | |
| Prci15g0807 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 186 | IPR001841 | - | |
| Prci15g0807 | 220 | ProSiteProfiles | Zinc finger SWIM-type profile. | 48 | 78 | IPR007527 | GO:0008270 | |
| Prci15g0807 | 220 | Pfam | SWIM zinc finger | 48 | 76 | IPR007527 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci15g0807 | Prci-Chr15 | 5171853 | 5172999 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci15g0807 | - | - | pcin:129294411 | 422.55 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Prci15g0807 | 15 | 5171853 | 5172999 | Prci15g0807 | 15 | 5171853 | 5172999 | ECH |