Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0576 ATGCTGAGGAATTTGTTGTGGGCAACATCGAAGCATGATGTATATGTTACACAAAACTACTCTGTGATGCATTGGTCATCTTTACTCCGAAGGAGTAAAGAAGTACTTAATGTGGCGAAACCGATTGTTCCAACTGTTAAGCGCCCTGAGTTTTTGGCTCAACCTGTCTCCAGAGTACAAATAAGCACCATGGCTGTTGGGAAAAATTTAATGGTAGCTGGTGGTTTCCAGGGTGAGCTTATTTGCAAGAATCTGAATCAATCTGGAGTTGCTTTCTGCAGTAAAATAACTACCGATGATAATGCTATAACCAATGCTGTGGATGTTTACCACGATCCCAGTGGGTCATTGAAGGTCATGACAGCAAATAATGACGCCCAAGTTCGGGTTTTCAATGCTGATAATTTTGCTTCTCTTGGTTGCTTCAAATATGACTGGTCTGTCAACAGTATTTCTGTCAGTCCCGATGGAAAATTGTTAGCTGTTCTTGGGGATAGTGCTGAGGGTTTGATAGCTGATGCTGACACCGGAAAGGTTACTGGGAGCCTGACAGGACACTTGGACTATTCTTTTGCTTCTGCTTGGCACCCAGATGGGCGAGTATTGGCTACTGGGAATCAGGATACAACATGTAGGTTGTGGGACATCAGAAATCTTTCACGCTCCGTCGCTGTACTCAAGGGAAGAATGGGGGCAGTAAGAGCTCTAAGGTTCACTTCCGATGGACGGTTTTTGGCTATGGCTGAGCCAGCAGATTTTGTCCATATTTTTGACTCTCGCAGTGACTACAAACAAGGACAAGAAATTGATTTATTTGGTGAGATCGCTGGTATTTCCTTTAGTCCGGACACGGACGCTCTGTTTGTTGGTATTGCTGATCGTACTTATGGAAGCTTGTTAGAGTTTAACAGGAAACATTTTAATCAATATCTAGACTCCGTCTTTTAG 948 0.4335 MLRNLLWATSKHDVYVTQNYSVMHWSSLLRRSKEVLNVAKPIVPTVKRPEFLAQPVSRVQISTMAVGKNLMVAGGFQGELICKNLNQSGVAFCSKITTDDNAITNAVDVYHDPSGSLKVMTANNDAQVRVFNADNFASLGCFKYDWSVNSISVSPDGKLLAVLGDSAEGLIADADTGKVTGSLTGHLDYSFASAWHPDGRVLATGNQDTTCRLWDIRNLSRSVAVLKGRMGAVRALRFTSDGRFLAMAEPADFVHIFDSRSDYKQGQEIDLFGEIAGISFSPDTDALFVGIADRTYGSLLEFNRKHFNQYLDSVF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0576 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Prci15g0576 315 Gene3D - 70 310 IPR015943 GO:0005515
Prci15g0576 315 FunFam WD-40 repeat family protein 96 312 - -
Prci15g0576 315 SMART WD40_4 135 173 IPR001680 GO:0005515
Prci15g0576 315 SMART WD40_4 219 258 IPR001680 GO:0005515
Prci15g0576 315 SMART WD40_4 176 215 IPR001680 GO:0005515
Prci15g0576 315 SUPERFAMILY WD40 repeat-like 54 302 IPR036322 GO:0005515
Prci15g0576 315 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 312 - -
Prci15g0576 315 Pfam WD domain, G-beta repeat 178 215 IPR001680 GO:0005515
Prci15g0576 315 ProSitePatterns Trp-Asp (WD) repeats signature. 202 216 IPR019775 -
Prci15g0576 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0576 Prci-Chr15 3737289 3741437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0576 161 295 Miscellaneous Gene Families AT5G08390 31.333 5.02e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0576 - - gmx:100775453 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0576 15 3737289 3741437 Prci15g0576 15 3737289 3741437 ECH