Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0562 ATGGCGCTGGAATACGTTCCTGCTCTCCGCCATTTCCTACGTCGTGTGTGCTGGTTCTCTCGCTCCCCTCCACTACGCCCAGCTATGCCTCTACGCTCAAACCCCTCGTTTTGTTCTAAATGCCTCCTTTCCTCTAAATCCACAAGTCCTACCTCCGAAGTTTTTAAATCCCGTGCCACTTCCAAAGAGAATTATACGTTCTTTCTGAAGAAAGATGAGCGCCTGGCGGAGCCTGTTGGTGCTGCTCATGAGCTTGGCCGTGTTCAGAATACGAGCACAATTGCAGCCATCGTCACATCCTTGGGGGCCCCCCCTGGTGCTGTGGGAATTGTTCGACTTTCGGGGCCTTCTGCTGTGGCTATCGCTAGTCGAGTATTTCGACCTTCCAGGAAAAGGAAGAGGACGTGGCAACCCATTAGCCATGTTGTGGAGTATGGTATGGTGCTCGATGCAGATGGGAATGTAATTGATGAGGTTTTAGTAGTACCCATGTTAGCCCCGAGGTCTTACACTCGGGAAGACGTGATTGAGCTTCAATGTCATGGAAGTGAGGTGTGTCTACGCCGTGTATTGAGAACTTGTCTGGAAGCTGGAGCAAGACTTGCCCAACCAGGTGAATTTACTCTACGTGCTTTTCTAAATGGTCGGTTAGATCTTTCACAAGCTGAAAATGTTGAAAGGCTAATAACAGCCAAATCTGTTGCTGCTGCTGACGCAGCACTGGCTGGAATCCAGGGGGGTTTCTCTTCTCTTGTCAGGTCACTGAGAATACAGTGCATTGAGCTGCTTACAGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCTCTAGATTTAAATTTATTAATGGATAAAATACATTCTATGTCGCAAGACGTACGGGATGCATTGGAGACGGCCAATTATGACAAGCTTCTTCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGCGAGAGGGCTATAGTTACTGAAATTGCTGGAACCACCCGGGATGTGATTGAAGCAAGTGTCACCATCAATGGTATTCCTATAACCTTGCTTGATACTGCAGGAATCAGGGATACTCATGACATTGTGGAAAAGATTGGCGTAGAGAGATCTGAAGCAGTTGCTATGGGAGCTGATTTGATTATCATGACTGTCAGTGCTGTTGAAGGGTGGACTTTGGAAGACACCAAACTTCTAGAAAGGATTCAATCTACTAAGATATTAATTTCTGCTGCTGTCAAATCTTCCCCTAACAATAGAGATCAACGGGATCTTCCACCCCTGCAATTCTTGTGGTCAACAAGATAG 1347 0.4647 MALEYVPALRHFLRRVCWFSRSPPLRPAMPLRSNPSFCSKCLLSSKSTSPTSEVFKSRATSKENYTFFLKKDERLAEPVGAAHELGRVQNTSTIAAIVTSLGAPPGAVGIVRLSGPSAVAIASRVFRPSRKRKRTWQPISHVVEYGMVLDADGNVIDEVLVVPMLAPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAQPGEFTLRAFLNGRLDLSQAENVERLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLLMDKIHSMSQDVRDALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTINGIPITLLDTAGIRDTHDIVEKIGVERSEAVAMGADLIIMTVSAVEGWTLEDTKLLERIQSTKILISAAVKSSPNNRDQRDLPPLQFLWSTR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0562 448 SUPERFAMILY Folate-binding domain 92 216 - -
Prci15g0562 448 FunFam tRNA modification GTPase MnmE 312 438 - -
Prci15g0562 448 CDD TrmE_N 92 215 IPR018948 -
Prci15g0562 448 NCBIfam small GTP-binding protein domain 312 414 IPR005225 GO:0005525
Prci15g0562 448 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 106 418 IPR004520 GO:0003924|GO:0005525|GO:0006400
Prci15g0562 448 Pfam MnmE helical domain 219 312 IPR025867 -
Prci15g0562 448 FunFam tRNA modification GTPase MnmE 88 216 - -
Prci15g0562 448 Pfam GTP-binding protein TrmE N-terminus 93 216 IPR018948 -
Prci15g0562 448 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 311 448 IPR031168 -
Prci15g0562 448 Gene3D Probable tRNA modification gtpase trme; domain 1 80 216 IPR027266 GO:0005515
Prci15g0562 448 CDD trmE 309 422 IPR031168 -
Prci15g0562 448 Hamap tRNA modification GTPase MnmE [mnmE]. 92 448 IPR004520 GO:0003924|GO:0005525|GO:0006400
Prci15g0562 448 PANTHER TRNA MODIFICATION GTPASE GTPBP3 70 419 - -
Prci15g0562 448 Pfam 50S ribosome-binding GTPase 313 416 IPR006073 GO:0005525
Prci15g0562 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 410 IPR027417 -
Prci15g0562 448 Gene3D - 305 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0562 Prci-Chr15 3650590 3655068 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0562 K03650 - qsa:O6P43_015271 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0562 15 3650590 3655068 Prci15g0562 15 3650590 3655068 ECH