Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0539 ATGGATGTGTCGGGTGCTCAGCCGGGTCTATCTCTCGGCTTAAACGCTCAAATTTCGTCGCCGGCTTTGGCAGGCCATGTTAATGATAATTTAGTTTCCTTTCAACAGAATTCGAGCTTTCGTAGTTCCTCCAATACAACCCCTCCTGTGCCGTTGCAGTTGCTCGATGATCAAGACGACAAGGTTAGGGTCAAATCCAGTGAAGTAACAGAGGAGGAGGAGGAGGAAGGATCAGTGGAAGATGAAGCGATCGACTTTATGGGTCGGCCTGCGTGTGTTAAGAGGAAATCAGAAGTACAGTCGAGTTTCTCCTCGAATCCTCCGAAGTGGCTCGCTGTCGATTCGGGGCATGGCGCCAGGAGAGCTTCAGTGCAGGCTTGGGCGAACCAGCCACTGGAGGTAGCTGACCCCGAGATTCACGAAATAATGGAGAAGGAAAAGCGGAGACAGTTCACAGGAATAGAATTGATTGCTTCTGAGAATTTTGTGTGCAGAGCTGTCTTGGAAGCTCTGGGTAGTCATTTGACGAACAAGTATTCTGAGGGAATGCCTGGAGCCAAATACTACACAGGTAATCAGTTTATCGATCAGATGGAATTGCTTTGCTGTGACCGTGCATTGGCTGCGTTTGATCTTCATCCAAGCAAGTGGGGCGTGAACGTTCAGCCTTACTCATGTACTTCTGCCAACTTTGCTGTGTACACCGGTATATTGCATCCAGGGGATCGAATTATGGGTTTGGATCTGCCATCCGGTGGGCATCTGAGTCATGGATATTATACCCAGAGTGGAAAGAAAATTTCTGCAGCATCGATATACTTCGAAACTCTTCCCTACAAAGTCAATCCTCTAACAGGCTACATAGACTATGACAAGCTTGAAGAAAAAGCCTATGATTATCGCCCCAAACTGCTTATATGCGGAGGCAGTTCGTATCCTAGAGAATGGGATTATGCAAGGTTTAGGAAGATTGCTGATAAGTGTGGGGCTGTTTTGATGTGTGACATGGCTCATGTTAGCGGGCTTGTCGCAGCTAAGGAAGTTGCTAGCCCTTTTGATTACTGTGATGTTGTTACTTCAACAACCCACAAAAGTCTCAGAGGTCCAAGGGGAGGTATCATCTTTTATAGGAAAGGTCCAAAACCTAGGAAGCAAGGCCTGGCTCTTAATCATGGGGGTGATGGTAGTTATGACTTTGAGGAAAAGATAAACTTTGCTTTATATCCATCCTTACAAGGAGGTCCACACAATAATCACATTGCTGCTCTTGCCTTAGCCTTAAAACAAGTTGCAACTCCAGATTACAAAGCATATATGCAACAGGTGAAGAAAAATGCACAGGCGTTAGCATCTGCTTTGCTGAAAAGAAAATGCAGACTGGTAACCGATGGCACTGACAATCACTTGTTGCTCTGGGACCTAACTGCACTTGGCTTAATTGATAGAAACTATGAGAAGGTCTGTGAGGCTTGTAATATCACACTCAACAAATGTGCCATTTATGGTTCTATTTCACCTGGGGGAGTTCGAATCGGTACTCCTGCGATGACATCAAGAGGTTGCTTAGAGGATGATTTTGAGATCATAGGTGATTTTCTTCTGAAGGCAGCACAGATTACCAGCAATATACAGAGGGAATATGGAAAATCTTGTAAAGACTTCCTCAAAGGTCTTCAAAATAATAAAGATATTGTTGAGCTCAGAAATCAGGTTGAGGCATTTGCTTCCGAGCTTCCAATGCCAGCATTTGATATTTGA 1758 0.4494 MDVSGAQPGLSLGLNAQISSPALAGHVNDNLVSFQQNSSFRSSSNTTPPVPLQLLDDQDDKVRVKSSEVTEEEEEEGSVEDEAIDFMGRPACVKRKSEVQSSFSSNPPKWLAVDSGHGARRASVQAWANQPLEVADPEIHEIMEKEKRRQFTGIELIASENFVCRAVLEALGSHLTNKYSEGMPGAKYYTGNQFIDQMELLCCDRALAAFDLHPSKWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDLPSGGHLSHGYYTQSGKKISAASIYFETLPYKVNPLTGYIDYDKLEEKAYDYRPKLLICGGSSYPREWDYARFRKIADKCGAVLMCDMAHVSGLVAAKEVASPFDYCDVVTSTTHKSLRGPRGGIIFYRKGPKPRKQGLALNHGGDGSYDFEEKINFALYPSLQGGPHNNHIAALALALKQVATPDYKAYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLIDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFEIIGDFLLKAAQITSNIQREYGKSCKDFLKGLQNNKDIVELRNQVEAFASELPMPAFDI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0539 585 Gene3D Aspartate Aminotransferase, domain 1 136 581 IPR015422 GO:0003824
Prci15g0539 585 Gene3D - 161 440 IPR015421 GO:0003824
Prci15g0539 585 SUPERFAMILY PLP-dependent transferases 119 583 IPR015424 -
Prci15g0539 585 MobiDBLite consensus disorder prediction 38 52 - -
Prci15g0539 585 Pfam Serine hydroxymethyltransferase 132 532 IPR039429 -
Prci15g0539 585 MobiDBLite consensus disorder prediction 38 83 - -
Prci15g0539 585 CDD SHMT 136 574 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Prci15g0539 585 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 123 584 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Prci15g0539 585 FunFam Serine hydroxymethyltransferase 161 379 - -
Prci15g0539 585 Hamap Serine hydroxymethyltransferase [glyA]. 131 582 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Prci15g0539 585 MobiDBLite consensus disorder prediction 56 70 - -
Prci15g0539 585 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 356 372 IPR019798 GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0539 Prci-Chr15 3527685 3532113 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0539 K00600 - gmx:100776419 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0539 15 3527685 3532113 Prci15g0539 15 3527685 3532113 ECH