Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0446 ATGGAGTTACCGGAGTGCCCCGTTTGCCTTCAAACCTACAACGAATATAATACAATTCCTCGGGTTCTTGCTTGTGGCCACTCGGTTTGTGAAGCCTGCCTTGTTGAACTTCCACAGCGTTATCCCACCACCATCCGCTGCCCTGCGTGCACACAACTCGTCAAGTACTCCGCTCAGCAAGGCCCCTCCGCCCTTCCCAAGAACATCGACCTCCTCAGACTCTGTATTGAACACCCATCTACTTCTTTTGATGTCTCGCAGAATTCGAAGCATCATTCCGCAAAGAACGGTGATGATCACTATGAATTTTGTCCTCGGTTCTGGTCAGACGAGTTTTATGCCGTCTGGAAGGATTGGATTCTCCCCCACGACGTTGTTTCAATTGAGTCCGAAACCCCTGGCCGCGATGGCCCTGCTCTTGGCCGTCTTCTACGAGGGCGATTCATTTCAACTTTTTCTTTGAACGGTAGAGTTTGCATGAAGAAAAACCAGAGCCTGAGCCTTGCCCCGATTGCTTCTTTACGGCCCATCAATCGTTCTAAGTTAAAGCTTAGCTATGAGGCTCGAATTATGATGTGTTTGGAAGGGATGAAAGAGGTTCAGAGGCATGAGTTAGCATTGTTTCTCGAAGCGTCCATGAAACAGAATAGGATATGTGATGCTTATGGCTTGTGGAGCGACTTAGTAGATGGTCATCTATATTTAGTGTGTGAGAGACACAATGGTAGTCTTGCCGAGAAGTTCAGTGAGTTGAAAAGTGGGTTTGTCGGTCTCGCTGGAGATGCTTTGAATAGAGATGGATTTGTTAGTTTTTCAATGAGAGGTTTGAATATTTGTGAAGCTTTGATTGCTCTGCACACTGAAGGTTTGGTTGCTGGATATTTTGGACTTTCTTGCTTCTGTTTTGATGAGCTCGACGGCATTTATTTTAATTTGAATGAGGCATTAGAGAAGGGAAGGAAGGTTCGTTTTGATCTAATGGATGCTATCTCTGGTGGCACAAGTAATACATATAAGCAAGAAGCAATTTTTGAACATGTCTTTAAATATGAGGATGTCATAAGCCCAGAGGGTTTGTTTGAATTATTGCTGAAGGAGACTATTACTCTAGAGAGTGGGCGCACAAGATACCCCGTTGGATATAGCTCTGATGTATGGTCATTGGGCTGTGTGCTGCTGCGCCTCCTTTTTGGAAATGCTCTCCCCCAGTATGCAGTGGAAATGAATGGGGAGAAGGAAGGCCTTGACCTTTTAGCTAGTTATATTTGTTGGGCGGAGAGAATTGATTGCTTGTTGGAAGATAAATTGGGATCAGAGTATTTGTTGTTGAGGCAGACTCTCAGCAAATGTTTGAAAATACATCCAGGAAATCGCCCAGATGTGGCAGATGTGAGAAAATGCATTTGGGATATGCTCATCAAACCTCCATTTGATGTTGTTGGCACCTTGGAGGTTGCAATAGATAGAAACAGCGCAAATTGCTGCTTGATTCTGGGGGAGTTGTGTCAGTTTCCCCGACAATCCTCAACACTGCAGAGAGAGTGTGAGTTGCAGGACAAAGAAGATGGTGGTGTACCAAATTTTGTTCAGGACGGGAAGGAGAAACCTGATGGAGATTTTGTAGGGGGCCACTCGAAGGAAATAACTGAAGTTAAAGATCTAAGAGGCCATCTTGATTGTATCACCGGATTGGTTGTTGGAGGGGGATTTCTGTTTAGCTCCTCGTTTGATAAAACCATCAATGTATGGTCATTGCAGGACTTTTCTCATTTACATACCTTTAGAGGTCATGAGAATAAAGTCATGGCTCTGGCTTATGTGGATGGAGAAGAGCCCTTGTGCATAAGTGGTGACAGCGGAGGGGGTATATTTATCTGGGAAATAATTTCCCCTTTTGGGCAACACCCATTGAGAAAGTGGTATGAGCAGAAGGATTGGCGTTTTAGTGGGATCCATTCTATGGTTGTTTCAAGAAATCTTTGCCTTTACACTGGTAGTGGTGATAAATCAATAAAAGCTTGGTCATTGAAGGATGGAACTCTAATGTGCGCAATGAATGGTCATACATCTGTAGTCTCCACACTAGCATTATGTGATGATGTTCTTTATAGTGGTAGTTGGGATGGTACCATTAGGTTGTGGAGTCTTATTGATCACAGCCTGTTGTCAGTGCTGGGGGAAGATGTGCCTGGAGAGATGAAAGCTGTCCTGTCTATCACAGTTGACAGACATCTTCTCGTTGCGTCTCATGAAAATGGATGCATAAAGGTCTGGAGAAATGACATCTTCATGAACTCCAAAACATTGCATAGTGGTGCCATTTTTGCTATTAGTATTCAGGGGAACTGCCTCTATACAGGGGGTTGGGACAAAAAAGTTAATATACAGGAATTGTCAGGAGATGAGTTTCAATGGGTTGTCAATTCAGTTGGATATATTCCTTGCAGTTCTGTTGTAACAGCTATGCTATGCTGGCAAGGAGAACTATTTGTTGGGTTTGCTGATAAGTCTGTCAAGGAGAACATTGGCCGCATTAAAAGAACTATCAACGATTACGCGAGCTTGAACTACTGGGTTGTTTGCGACTACTATCGTCTGGTGGACTCGGTCAATGCCTTTGAGCCGCTGATGCAGAGACTCTCTGATGAGCAGTTGACTGCGAAAACCCAGGAGTTCCGGCTCCGGCTTAAGCAAGGGGATTCGCTTGCTGATATTCAAGCTGAAGCATTTGCCGTTGTTCGTGAAGCTGCAAGAAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGATGGGTCCATTGCCGAAATGAAAACGGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCATATCTTAATGCCTTGACTGGCGAGGGTGTCCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGTCGTATTCATCGATTCTTAGGTCTTTCTGTGGGTCTTATTCAGAGGGGGATGACTGCTGAAGAGCGGAGATCTTATTATAGATGTGATATAACATACACCAACAATTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGCGGACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTAGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGTGGTGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCCGAACTGCTTTTACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTCGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAATGACCCCTGGGCTAGATTTGTGATGAATGCTTTGAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCCTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTCGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCAGGAATGACCGGAACTGCAAAAACAGAAGAGAAAGAGTTTTTAAAAATGTTTCAAATGCCAGTCATCGAAGTGCCCACTAATCTCCCTAACATGCGAAAGGATTTACCTATCCAAGCTTTTGCTACTGCTCGGGGGAAATGGGAGCAGGTTCGCCGTGAAGTTGATTATATGTTCAGACAAGGTCGTCCAGTCTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTATTGTCTGGTTTGCTTAAGGAATGGAATATTCCCCATAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGATTGTTGCACAGGCAGGACGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACCGATATAATCCTTGGTGGAAATCCAAAAATGCTCGCCAGAGAAATTATAGAGGACAGCTTACTTTCATTTTTGACACCAGAAGCTTCTAATGTTGAACTTGTTGGGGAGGCAATTTCACAAAAGGTGCTTCCAAATATAAAGGTTGGATCATCATCACTGGCTTTATTGGCCAAGACAGCCTTAATGGCTAAATATGCATCCAAAAGCGAAGTCAAAAGCTGGACATATCAGAAGGCAAAATCTTTCATCTCTGAGGCTATTGAAATGAGTCAGTCATATAATTTGGATGAGTTGGAAAAGCTTGCAAATGAAGAGTTTGAGATCTATCCTCTTGGTCCAGCGGTAGCACTTGCTTATTTGTCAGTTTTGGAGGATTGTGAAAAGCACTGTTTGAATGAAGGATCTGAGGTGAAAAGACTTGGGGGCCTTCATGTAATTGGTACATCTTTGCACGAGTCCCGAAGAATTGACAACCAGCTCCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAAATGTTTCAGAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATATCAAAGATTACAAATGATGAAGATATGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTCTTGGCACTGCAAATTAATGCAGAGAAGTACTTCTTTGGTGTGAGAAAGAGCCTAGTTGAGTTTGATGAAGTATTAGAGGTCCAACGAAAGCATGTTTATGACCTTAGGCAGTTAATTCTAACAGGGGATGCTGAAAGTTGTTCCCAACAAATATACCAGTACATGCAAGCTGTGGTGGATGAGATTGTCTTCAGTAACGTTGATCTACAAAAGCATCCAGGTAGTTGGAATTTGAGTAAGCTTATTAAGGAGTTTATGACAATTGGTGGAAAGGTGTTACATGAATCTTTTGCAGGGATTTCTGGAGACACTTTGCTGAAATCACTTGAACGATTGCATGATGTGGGTTCCGTTGATATTGTCAACTTTTCTCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCCGTGGAATTCGCCGGAAGGGATCTTCATTGAGACGTTGGCTTACTATATGCTCTGATGATTTAATTGAGGAGGGAAATTTTCGGACAGTCAGTAATCTTCTTCGCAAGTACCTTGGAGATTTTTTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGGCGAGAGACATGTACAGGAAATTGAGAGAGCAGCTCTTGTGAAAACGCTGGACTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGTTCAGCGGTAAATGTAAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTTAGCGCAACCCGAAGGTTAACTGTGGAGTCACTGCTGCAATATTGGGCATCTCCAATGGAATCCCAAGAACTATTTGATTTCTAA 5508 0.4303 MELPECPVCLQTYNEYNTIPRVLACGHSVCEACLVELPQRYPTTIRCPACTQLVKYSAQQGPSALPKNIDLLRLCIEHPSTSFDVSQNSKHHSAKNGDDHYEFCPRFWSDEFYAVWKDWILPHDVVSIESETPGRDGPALGRLLRGRFISTFSLNGRVCMKKNQSLSLAPIASLRPINRSKLKLSYEARIMMCLEGMKEVQRHELALFLEASMKQNRICDAYGLWSDLVDGHLYLVCERHNGSLAEKFSELKSGFVGLAGDALNRDGFVSFSMRGLNICEALIALHTEGLVAGYFGLSCFCFDELDGIYFNLNEALEKGRKVRFDLMDAISGGTSNTYKQEAIFEHVFKYEDVISPEGLFELLLKETITLESGRTRYPVGYSSDVWSLGCVLLRLLFGNALPQYAVEMNGEKEGLDLLASYICWAERIDCLLEDKLGSEYLLLRQTLSKCLKIHPGNRPDVADVRKCIWDMLIKPPFDVVGTLEVAIDRNSANCCLILGELCQFPRQSSTLQRECELQDKEDGGVPNFVQDGKEKPDGDFVGGHSKEITEVKDLRGHLDCITGLVVGGGFLFSSSFDKTINVWSLQDFSHLHTFRGHENKVMALAYVDGEEPLCISGDSGGGIFIWEIISPFGQHPLRKWYEQKDWRFSGIHSMVVSRNLCLYTGSGDKSIKAWSLKDGTLMCAMNGHTSVVSTLALCDDVLYSGSWDGTIRLWSLIDHSLLSVLGEDVPGEMKAVLSITVDRHLLVASHENGCIKVWRNDIFMNSKTLHSGAIFAISIQGNCLYTGGWDKKVNIQELSGDEFQWVVNSVGYIPCSSVVTAMLCWQGELFVGFADKSVKENIGRIKRTINDYASLNYWVVCDYYRLVDSVNAFEPLMQRLSDEQLTAKTQEFRLRLKQGDSLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAEERRSYYRCDITYTNNSELGFDYLRDNLAGSSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLLRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNMRKDLPIQAFATARGKWEQVRREVDYMFRQGRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTPEASNVELVGEAISQKVLPNIKVGSSSLALLAKTALMAKYASKSEVKSWTYQKAKSFISEAIEMSQSYNLDELEKLANEEFEIYPLGPAVALAYLSVLEDCEKHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLALQINAEKYFFGVRKSLVEFDEVLEVQRKHVYDLRQLILTGDAESCSQQIYQYMQAVVDEIVFSNVDLQKHPGSWNLSKLIKEFMTIGGKVLHESFAGISGDTLLKSLERLHDVGSVDIVNFSLPNLPAPPNAFRGIRRKGSSLRRWLTICSDDLIEEGNFRTVSNLLRKYLGDFLIASYLNVVEESGYGERHVQEIERAALVKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFDF 1835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0446 1835 Pfam RING-type zinc-finger 6 48 IPR027370 -
Prci15g0446 1835 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Prci15g0446 1835 SUPERFAMILY RING/U-box 5 58 - -
Prci15g0446 1835 Gene3D Helical scaffold and wing domains of SecA 1552 1661 - -
Prci15g0446 1835 Gene3D - 633 850 IPR015943 GO:0005515
Prci15g0446 1835 SMART serkin_6 139 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci15g0446 1835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 931 1094 IPR014001 -
Prci15g0446 1835 FunFam Protein translocase subunit SecA 1552 1671 - -
Prci15g0446 1835 FunFam Protein translocase subunit SecA 1693 1822 - -
Prci15g0446 1835 SMART SecA_PP_bind_2 1073 1184 IPR011130 GO:0016020|GO:0017038
Prci15g0446 1835 CDD SF2_C_secA 1246 1517 IPR044722 -
Prci15g0446 1835 Hamap Protein translocase subunit SecA [secA]. 844 1825 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 685 716 - -
Prci15g0446 1835 CDD DEXDc_SecA 884 1240 - -
Prci15g0446 1835 Gene3D - 1074 1194 - -
Prci15g0446 1835 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Prci15g0446 1835 Pfam WD domain, G-beta repeat 686 715 IPR001680 GO:0005515
Prci15g0446 1835 Pfam WD domain, G-beta repeat 551 584 IPR001680 GO:0005515
Prci15g0446 1835 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 593 IPR001680 GO:0005515
Prci15g0446 1835 Gene3D - 527 630 IPR015943 GO:0005515
Prci15g0446 1835 NCBIfam preprotein translocase subunit SecA 870 1642 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Prci15g0446 1835 Gene3D Helical scaffold and wing domains of SecA 1694 1822 - -
Prci15g0446 1835 CDD RING-HC_TRIM32_C-VII 4 53 - -
Prci15g0446 1835 SMART ring_2 6 50 IPR001841 -
Prci15g0446 1835 SUPERFAMILY Protein kinase-like (PK-like) 214 475 IPR011009 -
Prci15g0446 1835 SMART WD40_4 760 797 IPR001680 GO:0005515
Prci15g0446 1835 SMART WD40_4 587 627 IPR001680 GO:0005515
Prci15g0446 1835 SMART WD40_4 718 759 IPR001680 GO:0005515
Prci15g0446 1835 SMART WD40_4 633 675 IPR001680 GO:0005515
Prci15g0446 1835 SMART WD40_4 547 584 IPR001680 GO:0005515
Prci15g0446 1835 SMART WD40_4 678 715 IPR001680 GO:0005515
Prci15g0446 1835 Gene3D - 864 1241 IPR027417 -
Prci15g0446 1835 SMART SecA_DEAD_2 845 1228 IPR011115 GO:0005524|GO:0016020|GO:0017038
Prci15g0446 1835 FunFam Protein translocase subunit SecA 863 1083 - -
Prci15g0446 1835 ProSitePatterns SecA family signature. 1328 1343 IPR020937 GO:0006605|GO:0006886|GO:0016020
Prci15g0446 1835 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 724 IPR001680 GO:0005515
Prci15g0446 1835 Pfam SecA preprotein cross-linking domain 1080 1184 IPR011130 GO:0016020|GO:0017038
Prci15g0446 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1241 IPR027417 -
Prci15g0446 1835 Pfam SecA Wing and Scaffold domain 1547 1822 IPR011116 GO:0016020|GO:0017038
Prci15g0446 1835 SUPERFAMILY Helical scaffold and wing domains of SecA 1726 1832 IPR036266 -
Prci15g0446 1835 ProSiteProfiles SecA family profile. 845 1549 IPR014018 -
Prci15g0446 1835 Pfam SecA DEAD-like domain 862 1227 IPR011115 GO:0005524|GO:0016020|GO:0017038
Prci15g0446 1835 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 9 1832 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 SUPERFAMILY Pre-protein crosslinking domain of SecA 1072 1193 IPR036670 GO:0016020|GO:0017038
Prci15g0446 1835 ProSiteProfiles Protein kinase domain profile. 137 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci15g0446 1835 FunFam Preprotein translocase SecA subunit 1074 1194 - -
Prci15g0446 1835 SUPERFAMILY Helical scaffold and wing domains of SecA 1553 1661 IPR036266 -
Prci15g0446 1835 Gene3D Transferase(Phosphotransferase) domain 1 201 471 - -
Prci15g0446 1835 PRINTS SecA protein signature 905 929 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 959 969 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 1012 1032 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 943 957 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 1165 1187 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 1239 1252 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 PRINTS SecA protein signature 1202 1219 IPR000185 GO:0005524|GO:0006605|GO:0006886
Prci15g0446 1835 Gene3D - 1243 1549 IPR027417 -
Prci15g0446 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1530 IPR027417 -
Prci15g0446 1835 SUPERFAMILY WD40 repeat-like 550 838 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0446 Prci-Chr15 2865224 2884490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0446 569 775 Acyl Lipid Metabolism Gene Families AT3G18860 29.630 5.40e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0446 K03070 - gmx:100793437 2768.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0446 15 2865224 2884490 Prci15g0446 15 2865224 2884490 ECH