Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0365 ATGCGTCACCGAGGCATGGATCCCGATGAGGAGGAGTACGAGGAGGAGTATGAAGATGACCAAGCGGTCGATGACGACGAAGCGGAAGTGGAGGAGGAGGAGGCCGACAGAGGAGCCTCCTCGAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTCGACGAGGACGAGGAGGAGGTAGAGGATGAGGATGATTTTGATGAAAGAGGCGGTCGAAAGCGCCAATACAAGAGAATGGCTGCTTCAAATTTCTTCGATGAAGAGGCGCAGGTGGACAGCGATGAGGAAGAGGAAGAGGAAGAAGCCGAGGACGATTTCATCGTCGAAGAGGGAACTGATCTACCAGATGAAGATGGTGGAGGGAGGATGCATAGCCGCCGCATGCTGCCCCATGATCAAGAAGACCATGAAGACCTTGAAGCTATGGCAAGGAGCATTCAAGAAAGATATGGAAGGCGTGTTACAGATTATGATGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGTGAGGCGGCTGTTTGCCTCATGCAAAAGTATATTGACAAAGGGTCTGAACTACAAATAAGGTCTGCTGTTGCTCTTGATCATCTCAAAAACTATATATATATTGAAGCAGATAAAGAAGCCCATGTGCGAGAGGCATGTAAAGGCCTGCGCAACATATTTGCCCAGAAATTAACACTTGTTCCAATTAGAGAGATGACTGATGTTCTTTCGGTTGAAAGCAAAGCTATTGATCTTTCTAGAGATACTTGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGTTGTGGATGTTGATAATGTACGGCAGAGGGTCACTGTGAAATTGATTCCAAGGATAGACTTACAGGCCCTTGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAACTGCATATCCGTGTAGAGCATAGACGTGACCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTACAAAACAGTATCAATAAAATCAATTAGTGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGTAAACCGGGTGAGAATGGAGATGGAGATGTAGCTAGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCATCAAGGGAGATCTAAAGAATTTGAAAGGGTGGGTTGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGTCTTCCAAAAACCCTGGCTGTAAATGAAAGGGAACTTTGTAAATACTTCGAACCTGGGAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGGGCTACTGGTATGGTGGTGAAAGTGGAGCAGCATGTGCTGATTATTTTATCTGACACAACAAAAGAACATATTCGTGTATTTGCTGATGATGTTGTGGAGAGTTCTGAAGTCACCACAGGAGTTACAAGAATCGGGGACTATGAGCTCCATGATCTTGTCCTGCTAGATAACTTGAGCTTTGGTGTAATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTTAAGGGAGTTCCTGACAGACCTGAAGTTGCATTGGTGAAATTAAGGGAAATCAAGTGCAAGATTGATAAAAAAATAAGTGTGCAGGATAGGTTTAAGAATACAATATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCCTGCAAAGGCAAACAAGGACCGGTGGAGCACATATATAGGGGAGTCTTGTTCATTTACGATCGACATCATCTTGAACATGCTGGCTTCATATGTTCAAAAGCTCAATCGTGTGTGGTTGTGGGAGGTTCACGGTCCAATGGCGATAGAAATGGTGATGCCTACTCAAGATTTGCTGGCCTTAGAACTCCACCTCGAATCCCACAATCTCCTAGGCGGTTTTCTCGAGGAGGGCCACCGATTGATTCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGACGGATTAGCTGGTGCAACAGTCAAAATTCGCCAAGGTCCTTATAAAGGTTATCGTGGGCGTGTTATAGAAGTTAAGGGCACATCAGTTCGGGTTGAACTGGAGTCCCAGATGAAAGTTGTGACAGTTGATCGAAGTCATATTTCTGACAATGTGGCTGTAACCCCGTATCGTGACTCATCACGATATGGAATGGGAAGTGAGACCCCAATGCATCCTTCTCGAACACCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCCACACCTATTCATGATGGGATGAGAACTCCTATGCGTGATCCAGCATGGAATCCTTACACTCCCATGAGTCCAAGGAATAACTGGGAAGATGGAAACCCGGGCTCTTGGGGTACCAGTCCACAGTACCAGCCAGGGAGTCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGCTGGGCAAGTACTCCTGGTGGCAATTACAGCGAAGCTGGGACGCCTAGGGACAATCCTGCTTATGCCAATGCTCCGAGCCCGTATTTACCATCAACACCAGGGGGACAGCCTATGACACCAAACTCAGCGTCTTATCTACCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCGGTTATAGGTGCAGACAGTGATGGACCGTGGTTTATGCCAGATATATTAGTCAATGTACGCCGGGCTGGAGAGGAATCTATTGTGGGAATCATAAGAGAGGTGCTTCCGGATGGATCTTGCAGGGTAGTCCTGGGATCAAGTGGGAATGGTGAAACAATAACAGCTCTTCCTAGTGAAATCGAGGCTGTAGTACCGAGAAAATCAGACAAAATAAAGATTATGGGTGGGGCTCTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGACGGTATTGTAAAGGTAGATGATACACTTGATGTGAAGATTTTAGACTTAGTCATTCTAGCTAAATTAGCTCAATCCTGA 3114 0.4583 MRHRGMDPDEEEYEEEYEDDQAVDDDEAEVEEEEADRGASSRKRRRSGFIDDDAEEVDEDEEEVEDEDDFDERGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEAEDDFIVEEGTDLPDEDGGGRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRVTDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNYIYIEADKEAHVREACKGLRNIFAQKLTLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTISTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCVVVGGSRSNGDRNGDAYSRFAGLRTPPRIPQSPRRFSRGGPPIDSGGRHRGGRGHDGLAGATVKIRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRSHISDNVAVTPYRDSSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDPAWNPYTPMSPRNNWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNYSEAGTPRDNPAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGADSDGPWFMPDILVNVRRAGEESIVGIIREVLPDGSCRVVLGSSGNGETITALPSEIEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0365 1037 FunFam Transcription elongation factor SPT5 161 263 - -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 53 69 - -
Prci15g0365 1037 Gene3D - 270 312 IPR014722 -
Prci15g0365 1037 CDD NGN_Euk 181 263 IPR039385 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 1 137 - -
Prci15g0365 1037 Pfam Spt5 transcription elongation factor, acidic N-terminal 88 175 IPR022581 -
Prci15g0365 1037 CDD KOW_Spt5_3 474 524 IPR041976 -
Prci15g0365 1037 PIRSF Spt5 2 1037 IPR017071 GO:0006357|GO:0032784
Prci15g0365 1037 Pfam Early transcription elongation factor of RNA pol II, NGN section 181 262 IPR005100 -
Prci15g0365 1037 PANTHER SUPPRESSOR OF TY 5 72 1014 IPR039659 GO:0006357|GO:0032784
Prci15g0365 1037 SMART kow_9 704 731 IPR005824 -
Prci15g0365 1037 SMART kow_9 984 1011 IPR005824 -
Prci15g0365 1037 SMART kow_9 422 449 IPR005824 -
Prci15g0365 1037 SMART kow_9 598 625 IPR005824 -
Prci15g0365 1037 SMART kow_9 270 297 IPR005824 -
Prci15g0365 1037 SMART kow_9 474 501 IPR005824 -
Prci15g0365 1037 Gene3D - 161 263 IPR036735 GO:0006355
Prci15g0365 1037 FunFam Transcription elongation factor SPT5 691 754 - -
Prci15g0365 1037 Gene3D - 691 754 IPR014722 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 92 118 - -
Prci15g0365 1037 FunFam Transcription elongation factor SPT5 270 312 - -
Prci15g0365 1037 SUPERFAMILY Translation proteins SH3-like domain 466 525 IPR008991 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 813 839 - -
Prci15g0365 1037 SMART nusgn_4 179 265 IPR006645 GO:0140673
Prci15g0365 1037 MobiDBLite consensus disorder prediction 10 34 - -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 661 708 - -
Prci15g0365 1037 CDD KOW_Spt5_6 978 1035 IPR041980 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 35 52 - -
Prci15g0365 1037 CDD KOW_Spt5_5 706 752 IPR041978 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 888 902 - -
Prci15g0365 1037 Gene3D - 417 474 IPR014722 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 119 137 - -
Prci15g0365 1037 CDD KOW_Spt5_2 423 473 IPR041975 -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 799 913 - -
Prci15g0365 1037 FunFam Transcription elongation factor SPT5 477 526 - -
Prci15g0365 1037 CDD KOW_Spt5_4 602 644 IPR041977 -
Prci15g0365 1037 FunFam Transcription elongation factor SPT5 417 474 - -
Prci15g0365 1037 MobiDBLite consensus disorder prediction 70 85 - -
Prci15g0365 1037 Pfam KOW motif 477 504 IPR005824 -
Prci15g0365 1037 Pfam KOW motif 708 737 IPR005824 -
Prci15g0365 1037 SUPERFAMILY Translation proteins SH3-like domain 415 453 IPR008991 -
Prci15g0365 1037 CDD KOW_Spt5_1 274 311 IPR041973 -
Prci15g0365 1037 Gene3D - 477 526 IPR014722 -
Prci15g0365 1037 ProSitePatterns Ribosomal protein L24 signature. 426 443 IPR005825 GO:0003735|GO:0005840|GO:0006412
Prci15g0365 1037 MobiDBLite consensus disorder prediction 762 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0365 Prci-Chr15 2429784 2437548 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0365 K15172 - gmx:100784916 1731.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0365 15 2429784 2437548 Prci15g0365 15 2429784 2437548 ECH