Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0327 ATGCCGGCGCCAATTTTAGTTCAGGATAAGGTTACTTCCTCTCCTTCTCTTTGTGGCTTCTACGGCCTCTCTTCTCTCTTCCCACATCTCCGAGAGAGAGAAGAGAAATCAACTCAATCAACCCTAGCAATGGCTACACTTCAAGCCTCCCTTCTCTGCAAACCTTGCCTCTCATTCACGTCTCCCTCGCCCCCAAAGCACCGACTTCTTCACTCTACCTCTTCGGCACTTCATCACTCACCTCTTTTCCCTTTCAATCCGCTCAGTCTCTCACAGCCTTCTGTCCGTACGGTTAGCTCAAATTTTCACAAGTTTCCATTTCGCCCGCGCGCGGCCCCCAACCCTTTTCACATTTCGACCGGAGAGCGAAACTTCGTGGTCGGAATCGAATTCTTGGGAGATATTTCTAATTTAACTGGCAAGGAATCGGATGCCAATGAAAATGTTGGGGGGAGATTAAATGTTATGGGAGACAGTTCAGTTTCAGATTCAAAACAATCGAGTGTCGACGGAGTTGATGCTGGAAGCTCCCAGATTGAGTTGCAGAGTGATACTGGGGAATTGACTTCGGAGGCTGATGAAGTGGGGGAGAAACATTTAGCGCGCTTGATTGCTGAGGCTGACGCGAATCCTCAAGATGCGACAAAGCAGAGTGCTCTGCTTGCTGAACTAAACAAGCACAGTGGGGGGGGTGAGAAGCCTGTAGAACGGGAAGAAAATAATACAAATTCGGGGGAAAAGGAGGTTGGCGACGCTAGATTGCCCTTTGTGGCGTTCTTGGTGGGTTTGTGGGCGAGGGCGAGGGATGTAATTCAGAAGGCTTTCTCTGATTTCTTAAATTGGTGGCCTTTTTGGCGGCAGGAGAAACATTTAGCGCGCTTGATTGCTGAGGCTGACGCGAATCCTCAAGATGCGACAAAGCAGAGTGCTCTGCTTGCTGAACTAAACAAGCACAGTCCGGAGTCTGTCATCAAACGTTTTGAAGAAAGGGATCGCGCTGTGGACAGCAGAGGAGTTGTAGAATATCTTAGAGCTCTTGTGGCCACTAATGTTATTGCTGAATATCTTCCCGACGAGAGATCTGATAAACCTTCTAGTCTTCCAACCTTGTTGCAAGATTTAAAGCAGCGAGCATCAGGTAACATGGATGAGCCTTTTCTGAATCCTGGAATCTCTGAGAAGCAGCCATTGCATGTGGTTATGGTTGAACCAAAGGTATCAAACAAATCACGTTTTGCACAGGAGCTTATCTCAACCATCTTATTCACTATTGCTGTGGGATTGGTTTGGTTTATGGGGGCTGCTGCACTTCAAAAATACATTGGAAGCTTAGGTGGGATTGGAACTTCAGGTGTTGGCTCAAGTTCTTCCTATTCCCCAAAGGAGTTGAATAAGGAAGTGATGCCAGAGAAGAACGTCAAAACATTCAAAGATGTGAAAGGCTGCGATGATGCAAAGCAAGAGCTTGAGGAAGTTGTAGAGTATCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCTAAGGGGATTCTCTTGACAGGAGCACCTGGAACCGGGAAAACTCTGTTAGCCAAGGCAATTGCTGGAGAAGCGGGCGTTCCTTTTTTCTATAGGGCTGGATCTGAATTTGAGGAAATGTTTGTTGGGGTTGGTGCACGACGAGTACGATCATTATTTCAAGCAGCCAAAAAGAAGGCTCCCTGTATTATTTTTATCGATGAAATAGATGCTGTTGGATCAACAAGGAAACAGTGGGAAGGCCACACGAAGAAGACATTACATCAACTACTTGTCGAAATGGATGGCTTTGAGCAGAATGAGGGAATAATATTAATGGCTGCTACAAACCTGCCAGATATTCTTGATCCAGCCTTAACGAGGCCTGGTAGATTTGATCGACATATTGTTGTGCCCAATCCAGATGTACGTGGTCGCCAAGAAATTTTGGAGCTCTACTTGCAAGATAAACCTTTAGCTGAAGATGTAGATGTGAAAACATTAGCTCGTGGGACACCAGGATTTAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTTGAAGGTGCAGAGAAATTGACAGCTACACAGTTGGAGTTTGCAAAAGACAGGATAATCATGGGAACCGAGCGTAAAACAATGTTCATATCAGAGGAGTCAAAAAAGCTTACTGCTTATCATGAGAGTGGGCATGCAATTGTTGCCTTCAATACTGAGGGTGCACATCCGATTCACAAGGCAACAATCATGCCACGCGGATCTGCCTTAGGAATGGTCACCCAACTCCCCTCAAATGATGAGACGTCAATCAGCAAGAAACAGTTATTAGCACGCCTTGATGTTTGCATGGGTGGAAGAGTTGCAGAAGAGCTTATCTTTGGTCACGATCATATAACCACTGGCGCAAGTAGTGATCTTCATACAGCAACTGAGCTTGCCCAATATATGGTCTCAAATTGTGGTATGAGTGATGCAATTGGACCAGTTCATATAAAGGAAAGACCAAGTTCTGATATGCAATCACGAATTGATGCAGAGGTTGTGAAACTCCTTAGAGAAGCATATGACCGTGTGAAAGCCCTTTTAAAGAAGCATGAGAAAGCATTACATGCACTGGCTAATGCATTATTGGAGTATGAGACACTTAATGCTGAAGATATAACGAGAATACTTCTCCCCTACCGAGAAGGACGGTTGCCAGAGCAACAGGAACAAGAAGCAGAAGGGGAGCTTGTCTTAGCCTGA 2769 0.4554 MPAPILVQDKVTSSPSLCGFYGLSSLFPHLREREEKSTQSTLAMATLQASLLCKPCLSFTSPSPPKHRLLHSTSSALHHSPLFPFNPLSLSQPSVRTVSSNFHKFPFRPRAAPNPFHISTGERNFVVGIEFLGDISNLTGKESDANENVGGRLNVMGDSSVSDSKQSSVDGVDAGSSQIELQSDTGELTSEADEVGEKHLARLIAEADANPQDATKQSALLAELNKHSGGGEKPVEREENNTNSGEKEVGDARLPFVAFLVGLWARARDVIQKAFSDFLNWWPFWRQEKHLARLIAEADANPQDATKQSALLAELNKHSPESVIKRFEERDRAVDSRGVVEYLRALVATNVIAEYLPDERSDKPSSLPTLLQDLKQRASGNMDEPFLNPGISEKQPLHVVMVEPKVSNKSRFAQELISTILFTIAVGLVWFMGAAALQKYIGSLGGIGTSGVGSSSSYSPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAEDVDVKTLARGTPGFNGADLANLVNIAAIKAAVEGAEKLTATQLEFAKDRIIMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSNDETSISKKQLLARLDVCMGGRVAEELIFGHDHITTGASSDLHTATELAQYMVSNCGMSDAIGPVHIKERPSSDMQSRIDAEVVKLLREAYDRVKALLKKHEKALHALANALLEYETLNAEDITRILLPYREGRLPEQQEQEAEGELVLA 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0327 922 FunFam ATP-dependent zinc metalloprotease FTSH 11 460 642 - -
Prci15g0327 922 CDD RecA-like_FtsH 475 640 - -
Prci15g0327 922 FunFam ATP-dependent zinc metalloprotease FtsH 717 906 - -
Prci15g0327 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 740 IPR027417 -
Prci15g0327 922 Pfam ATPase family associated with various cellular activities (AAA) 513 641 IPR003959 GO:0005524|GO:0016887
Prci15g0327 922 PANTHER METALLOPROTEASE M41 FTSH 229 909 - -
Prci15g0327 922 SMART AAA_5 509 644 IPR003593 GO:0016887
Prci15g0327 922 Coils Coil 856 893 - -
Prci15g0327 922 MobiDBLite consensus disorder prediction 153 189 - -
Prci15g0327 922 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 916 IPR005936 GO:0004176|GO:0004222|GO:0016020
Prci15g0327 922 MobiDBLite consensus disorder prediction 226 248 - -
Prci15g0327 922 Gene3D Peptidase M41 717 903 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Prci15g0327 922 ProSitePatterns AAA-protein family signature. 612 630 IPR003960 GO:0005524|GO:0016887
Prci15g0327 922 FunFam ATP-dependent zinc metalloprotease FtsH 643 717 - -
Prci15g0327 922 MobiDBLite consensus disorder prediction 152 193 - -
Prci15g0327 922 Gene3D - 643 716 - -
Prci15g0327 922 Gene3D - 453 642 IPR027417 -
Prci15g0327 922 SUPERFAMILY FtsH protease domain-like 724 901 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Prci15g0327 922 MobiDBLite consensus disorder prediction 229 246 - -
Prci15g0327 922 Pfam Peptidase family M41 723 898 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Prci15g0327 922 Pfam AAA+ lid domain 664 704 IPR041569 -
Prci15g0327 922 NCBIfam ATP-dependent zinc metalloprotease FtsH 405 895 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0327 Prci-Chr15 2111171 2121712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0327 228 922 Miscellaneous Gene Families AT5G53170 82.783 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0327 K08955 - qsa:O6P43_019892 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0327 15 2111171 2121712 Prci15g0327 15 2111171 2121712 ECH