Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0278 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGAGTACGACTCAGAGACCTTGGCTAGGACCAGACCTCGGTATAATCACCACTACGCAAGTAGTGCCCACCGCCATCGCGGTGGCGGCAGTGGTGCTCGCCCTAAGGCGCAAGACTCGTCCTTAATGGTGACCACAAGTTACCGCATTTTGTGCCACGATATCAAGGCGGGTGGAGTAATTGGCAAGTCAGGCAGCATTATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCTGGCGACGAGGAGCGAATCATTGAGATTTCTGACACGCGCCGTCGAGACCCAGAAGGCCGAATGCCATCGTTCTCGCCGGCGCAGGAGGCCTTGTTGTTGATTCATGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAGGAGGATTATGGAGGCAGAGGAAGCGGTAGCAGTAGCCGAGTCGCCACTAGACTGGTGGTGTCCAGAATGCATGTGGGTTGTTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATCGAGACCAAGACACAGATTAGGATACTCCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCCGAGGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTTCTTATATCATCACGCTTAAGGGAAAGCCAACACCGTGACCGCAGTCATTTTCACGGACGAGCACATTCACCAGAGCGATTTTTCCCTCCAGATGATGATTATATACCTCATGGGGCAGCTCGTAGATCCTCTATAGACGGAGCAACTTTTGGATCACGAATATCTACAGCCAATATAAGAAGTAATAGCTATCCTTCATTAGGTTATACAATGGAACCTGGGGCTCCTCCTGTAGCTGATGATGCACAGCCCCTTTATGGTGAAGACCTCATTTTCCGGATACTTTGTCCACTGGACAAAGTGGACCGTATTATAGGGGAATCAGAAGAATTTGTAGAGTTCCTTCAAACTGAAGTTGGTGTTGATGTTAAGGTAGATGATCATGTGGTTGGTTCAGATGAGCAGATAATCACCATTTCTTCAGATGAGAGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACACGCATTGTTGATCTTGAGCTAGATGGTGACAGCATCATAACCACCAGGCTTCTTGTTCCATCTAGTGACATTGAATGTTTAGATGGAAGAGATGTATCACTGTCAGAGATGAGTAGACTCACTGGTACAAATATTCAAATTCTCCCTAGAGAGCAGTTACCTCCCTGTGTTGCAAAACATGATGAGCTGGTACAGATTGTAGGTGAGATCAAAGCAGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGGGATTTCTTTCAGAGGGACACAGCACCATCATCTGCCTCAGCACCTAATACCGAGATATCTTCTTCCAGCAACATAGCTCCAGTTCATGAGGGTTACACTGGCACTGAAACATCTTTAACCTATCAGAATGTTCAACCTGTGGCAGCTTCACTTCCCTTAAAAGAAACTGGAGGATCTAGCACTGAGACAGGAAAGCAGAAAGAAGGTGATCGCCGTGATGATGTGATGAGCAGTTTGAATAGGATTCCTGTACCGCTTGTCACTAGAAGTACACTTGAAGTGGTCATACCCGAGTACGCAGTTCCAAAGCTTACAGCAAAGTCCAAAAACAAGCTTGCTCAGATAAGTGAGTTGTCAGGAGCCACTGTAACACTTGTAGAGGATAGGCCGGAGGAGACACAGAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTACTCCAAGGATTTATTCTGAGCACACAAGAAGATGCCCCCTAA 1944 0.4645 MERSRSKRNYYYDQEYDSETLARTRPRYNHHYASSAHRHRGGGSGARPKAQDSSLMVTTSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGSGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERFFPPDDDYIPHGAARRSSIDGATFGSRISTANIRSNSYPSLGYTMEPGAPPVADDAQPLYGEDLIFRILCPLDKVDRIIGESEEFVEFLQTEVGVDVKVDDHVVGSDEQIITISSDESPDDELFPAQEALLHIQTRIVDLELDGDSIITTRLLVPSSDIECLDGRDVSLSEMSRLTGTNIQILPREQLPPCVAKHDELVQIVGEIKAAREAILEVTSRLKNYLYRDFFQRDTAPSSASAPNTEISSSSNIAPVHEGYTGTETSLTYQNVQPVAASLPLKETGGSSTETGKQKEGDRRDDVMSSLNRIPVPLVTRSTLEVVIPEYAVPKLTAKSKNKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSTQEDAP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0278 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 58 109 IPR036612 GO:0003723
Prci15g0278 647 MobiDBLite consensus disorder prediction 33 52 - -
Prci15g0278 647 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Prci15g0278 647 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Prci15g0278 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 374 IPR036612 GO:0003723
Prci15g0278 647 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Prci15g0278 647 CDD KH-I_PEPPER_rpt2_like 166 238 - -
Prci15g0278 647 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Prci15g0278 647 MobiDBLite consensus disorder prediction 490 513 - -
Prci15g0278 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 641 IPR036612 GO:0003723
Prci15g0278 647 ProSiteProfiles Type-1 KH domain profile. 571 635 - -
Prci15g0278 647 Gene3D K Homology domain, type 1 570 642 IPR036612 GO:0003723
Prci15g0278 647 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 267 - -
Prci15g0278 647 MobiDBLite consensus disorder prediction 532 557 - -
Prci15g0278 647 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Prci15g0278 647 Gene3D - 320 480 - -
Prci15g0278 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Prci15g0278 647 Gene3D K Homology domain, type 1 160 242 IPR036612 GO:0003723
Prci15g0278 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 398 484 IPR036612 GO:0003723
Prci15g0278 647 SMART kh_6 403 477 IPR004087 GO:0003676
Prci15g0278 647 SMART kh_6 570 640 IPR004087 GO:0003676
Prci15g0278 647 SMART kh_6 319 392 IPR004087 GO:0003676
Prci15g0278 647 SMART kh_6 57 138 IPR004087 GO:0003676
Prci15g0278 647 SMART kh_6 162 238 IPR004087 GO:0003676
Prci15g0278 647 Pfam KH domain 61 109 IPR004088 GO:0003723
Prci15g0278 647 Pfam KH domain 573 636 IPR004088 GO:0003723
Prci15g0278 647 Pfam KH domain 166 234 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0278 Prci-Chr15 1851887 1858035 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0278 K21444 - gmx:100804167 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0278 15 1851887 1858035 Prci15g0278 15 1851887 1858035 ECH