Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0229 ATGGGACAGCTGGGAGCAGGCACGCAGGAGATGGTGATGCAGTGCTTGATATCTGCCTATCATGCAGATATTTTGGAAATATCTGGCACTGTATATCTATGCGGCGCACCAGGACCCGAAAAGGTTCACGAAGGAACCGATGTCACAAGTGAAAATGTTAAAAAAGGACCACACAGAGTTTTGTGTTGGATGAAGTCTGAGGAAGCATGGCCACGTCACTCTGGCACTGTCCCACTGGACGCATCTTCATCATCCAAAACAATCTCGCCCTCGCTTTCTTTCGTTATCCTCTGCCTCTCGCCGTTCTCTTCTTCCTTCACGTTTACCTCAATGGCGAGTTCGCTCTCTTTCGCCTTTCACGCCTCTTATCTCCCGCCACCCTCGCCCTCCTCTTCTACTCCTGCTTCTTCCTCCACTCTCTGTCTTCCCTCTTCATCTACTCATTTTCTGAGGCAATCCAGCAAGTCCTTAGCTTTCTTCAGTCCATCTCAGATACTCAGATGCACTGCTGTTGCGCCCAGAACCAGAAGAAACCATGCAGGTCGGCTCCTTGTTCGTATGTCCTGGGATGGACCCCTCTCTTCCGTGAAATTGATCACGCAGGCAAAAAATGTTGAGTTGGCGGATTCGGTAAAGCAGCACGTGGAGGAGAAAGTCGGGAAGGCGGTTCAGAACCATTGTCACTTGGTGAGGGAGGTGGATGTAAGGTTATCCATCCGAGGAGGAGGAGAATTTGGGAAAGGACCCCTCACCACAAGATGTGAGGTAACTTTGTTCACGAAGCGGCATGGAGTGGTGCGGGCAGAGGAAGAAGCAGAGACTATGTACGGGAGTATAGATTTGGTATCCTCAATCATTCAGAGAAAGCTGAGGAAGATAAAAGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGCTTCAACAGGTTGAAAGTCAGGGAGCCTGTAACTCCTTTGCCCCTCGATGACACAGAGGCAGAGACAGACACGCCTCCCCGACAGGAGGAAGAATTCATTGATGAGGTTGTCCGTACAAAATACTTTGACATGCCGCCGTTGACTGTGAGCGAAGCAATTGAGCAGCTGGAAAATGTTGATCATGACTTCTATGGCTTCCGAAATGAAGACACTGGGGAGATAAATATAGTGTACAGAAGGAAAGAAGGAGGTTATGGACTCATCATCCCCAAAGCAGACGGCAAGGCGGAGAAACTGGAATCTATGGTAGTTGAAACAGCCAGAGAACCCTCCCTCTCAGAATGA 1263 0.4941 MGQLGAGTQEMVMQCLISAYHADILEISGTVYLCGAPGPEKVHEGTDVTSENVKKGPHRVLCWMKSEEAWPRHSGTVPLDASSSSKTISPSLSFVILCLSPFSSSFTFTSMASSLSFAFHASYLPPPSPSSSTPASSSTLCLPSSSTHFLRQSSKSLAFFSPSQILRCTAVAPRTRRNHAGRLLVRMSWDGPLSSVKLITQAKNVELADSVKQHVEEKVGKAVQNHCHLVREVDVRLSIRGGGEFGKGPLTTRCEVTLFTKRHGVVRAEEEAETMYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTPLPLDDTEAETDTPPRQEEEFIDEVVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEDTGEINIVYRRKEGGYGLIIPKADGKAEKLESMVVETAREPSLSE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0229 420 PANTHER 30S RIBOSOMAL PROTEIN 184 406 - -
Prci15g0229 420 Hamap Ribosome hibernation promoting factor [hpf]. 196 397 IPR034694 -
Prci15g0229 420 Gene3D - 197 308 IPR036567 -
Prci15g0229 420 FunFam Ribosome-binding factor PSRP1, chloroplastic 198 301 - -
Prci15g0229 420 CDD RaiA 197 296 IPR003489 GO:0044238
Prci15g0229 420 FunFam ribosome-binding factor PSRP1, chloroplastic 352 403 - -
Prci15g0229 420 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 200 296 IPR003489 GO:0044238
Prci15g0229 420 NCBIfam ribosome-associated translation inhibitor RaiA 198 301 IPR003489 GO:0044238
Prci15g0229 420 Gene3D - 352 403 IPR038416 -
Prci15g0229 420 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 340 393 IPR032528 -
Prci15g0229 420 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 198 303 IPR036567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0229 Prci-Chr15 1544015 1546511 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0229 - - pcin:129294468 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0229 15 1544015 1546511 Prci15g0229 15 1544015 1546511 ECH