Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0180 ATGGCGAGATTATTGGGAACGATTCTGAAGCACCCAGAAGAAATATACCCAATGTTGAAGCTAAGGATGGTGATAAGGAATGCAGAGAAGGTGATTCCCGATCAGCAACCACATTGGGTTTTCTGCCATACAATCCTTCACAAGGTCGCTCGCAGTTTTGCCCTTACCATCCAGCACCTTGATTCCCACCTTCGTCATTCGATACTCGTATTTTATTTGGTTCTGAGAGCATTGGACACCGTTGAGGACGACACGAGTCTTCCTTCAAAAGTGAGAATACCTATTTTGCAAACCTTTTATCGGCGTATAGATGATCCACGCTGGAGCTTTTCCTGTGGTACCGAAGACTGTAAGATTCTTATGGAGCAGTTCCATCATGTTCGAACTGCCTTTCTTGAGCTCAACAGAAGTCACCAGGATGTGATTAGAGAAGTTAGCAAACAGATGGGAGCTGGAATGGCAAAATTTATTTGCAAGGAGATAGAGAGTATAGAAGACCTGAATGAGTACGCTCATTACGTAGCAGGGCTTGTAGGGTTAGGGCTTTCTAAGCTCTTTTATGCTTCTGGGTCAGAGGATTTAGCACCTGAATCCCTTTCCAACTCAATGGGTTTACTCCTTCAGAATGCAAATATCATTCGTGATTATTTGGAAGACATTAATGAGATACCAATGCCACGCACTTTTTGGCCTCGTCAGGTTTGGAGTAAATATGTGGACAGACTCGAGGACCTGAAAGACGAGAAGAATTCGGAGAAGGCATTGCAATGCTTGAATGAAATGGTCACAAATGCGTTGGTACATGTAGAATATTGCCTCAAATACTTGTCTGCTTTGACAGATCCGGCAATTTTCAGATTTTGTGCTGTTCCACAGGTCGTGGCTATTGGGACCCTAGCTTTATGCTACAATAATATTGATGTTTTCAGAGTTGCTTTGAAATTGAGACGTGGTCTCATTGCTAAACTCATCCACCAAACGAGAACAATGTCGGATGTCTACGGCGCTTTTTTAAAGTTCACTTCCATTATGAAAGCTAAGGTTGAGAAGGATGATCCAAACGCCATAACGACGCTTAGCAGGATAGAGGCAATCCAGAAAATTTGCAAGCAGAACTCTAAAACTTCGAATGAACAAAGGGAACACTACAAGGTGAACAAAGAGTTAGGGTATCATTCACCCCAGGGAGTTGCCATCTATGTTGCCATATGCTTGGCATTTGCATACCTGTATTCCAGCGTGCTCAACTTATACTGA 1257 0.4296 MARLLGTILKHPEEIYPMLKLRMVIRNAEKVIPDQQPHWVFCHTILHKVARSFALTIQHLDSHLRHSILVFYLVLRALDTVEDDTSLPSKVRIPILQTFYRRIDDPRWSFSCGTEDCKILMEQFHHVRTAFLELNRSHQDVIREVSKQMGAGMAKFICKEIESIEDLNEYAHYVAGLVGLGLSKLFYASGSEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVDRLEDLKDEKNSEKALQCLNEMVTNALVHVEYCLKYLSALTDPAIFRFCAVPQVVAIGTLALCYNNIDVFRVALKLRRGLIAKLIHQTRTMSDVYGAFLKFTSIMKAKVEKDDPNAITTLSRIEAIQKICKQNSKTSNEQREHYKVNKELGYHSPQGVAIYVAICLAFAYLYSSVLNLY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0180 418 ProSitePatterns Squalene and phytoene synthases signature 1. 170 185 IPR019845 GO:0016765
Prci14g0180 418 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 5 409 IPR044844 GO:0004311
Prci14g0180 418 NCBIfam squalene synthase 38 369 IPR006449 GO:0004310|GO:0008610
Prci14g0180 418 SUPERFAMILY Terpenoid synthases 41 369 IPR008949 -
Prci14g0180 418 SFLD Isoprenoid Synthase Type I 39 327 - -
Prci14g0180 418 FunFam Squalene synthase 1 36 372 - -
Prci14g0180 418 SFLD Squalene/Phytoene Synthase Like 39 327 IPR002060 GO:0009058
Prci14g0180 418 CDD Trans_IPPS_HH 41 322 IPR033904 GO:0004311
Prci14g0180 418 ProSitePatterns Squalene and phytoene synthases signature 2. 203 231 IPR019845 GO:0016765
Prci14g0180 418 Gene3D Farnesyl Diphosphate Synthase 36 373 IPR008949 -
Prci14g0180 418 Pfam Squalene/phytoene synthase 47 311 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0180 Prci-Chr14 1505828 1509801 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0180 K00801 - qsa:O6P43_002032 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci14g0180 14 1505828 1509801 Prci14g0180 14 1505828 1509801 ECH