Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1083 ATGGATTGGTTCTCATGGCTCTCAAGGACTGGCCTTGAGCCCTCCCTAGTGTATGAATATGGCCTTGCTTTTGCTCATAATGAGCTTGAAGAAGAAGACATAGTTTACTTCAACCATGAGTTTCTCCAGAGCATGGGCATCTCCATAGCCAAGCACAGACTAGAAATTCTCAAGCTTGCTAGGAAGGAGAAGGGGAAAAGCCCTCCTGCAGTGGCAAGGCTCATTGTGGCGATCAAGAGGACAAAGAGGTGCTTAGCTAATTACATTCGGACATTGACTCACTGTGAAGAATCAGCTCTTGTGGTTGTGCCATCAAAGCGCACTACTTATGGTACTAGGTGGAAGAGTGCAGTGGTGAAGAGAAACAAAAAGCTGATGATTGCTAAGCAAGAGAGGCTCTTTCTCACCAATGGAACTCCAACAACAGTAGTGCCTGCTCTGCCTGGTCTTGAAGGGTTTTCTAGTCCTGTGCTGTGCAGTGACCAGAAGGAAGAAAAGATGGATGCAGATGAAGAAGATGGGTATTGGTCAGCTGCTGTAGAAGAGATCAGGTGGGATACTTTGTTCACAGATTTGAAACCCAACTGA 588 0.4626 MDWFSWLSRTGLEPSLVYEYGLAFAHNELEEEDIVYFNHEFLQSMGISIAKHRLEILKLARKEKGKSPPAVARLIVAIKRTKRCLANYIRTLTHCEESALVVVPSKRTTYGTRWKSAVVKRNKKLMIAKQERLFLTNGTPTTVVPALPGLEGFSSPVLCSDQKEEKMDADEEDGYWSAAVEEIRWDTLFTDLKPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1083 195 Pfam SAM domain (Sterile alpha motif) 6 58 IPR001660 GO:0005515
Prci13g1083 195 Gene3D - 1 68 IPR013761 -
Prci13g1083 195 SUPERFAMILY SAM/Pointed domain 5 64 IPR013761 -
Prci13g1083 195 CDD SAM_superfamily 2 62 - -
Prci13g1083 195 PANTHER OSJNBA0033G05.11 PROTEIN 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1083 Prci-Chr13 9097802 9099205 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1083 - - pvu:PHAVU_010G157800g 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1083 13 9097802 9099205 Prci12g1782 12 35570592 35571600 CCT
Prci13g1083 13 9097802 9099205 Prci13g1083 13 9097802 9099205 ECH