Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0275 ATGGCGGGAGAAACATCATGGATCATTCACTACCTTGATAACGCAACCAGGGAGCCTAGGGAGTTTGATTCATTTTTAGAGGTTGGTGAGGAAAGCGATAAAGAAGTCACTGCTGTTTCTGTGGATAGTATTTTGCCGGATGACCTGTTGGAACGTATCCTTGCCTATCTTCCCGTTGCAAGCATCTTCAGAGCAGGTTGTGTGTGTAAGAGATGGAATGAAATTGTTACTTCAAAGAGGTTTCTATGGAATCTTTCACATGTGCTTCCACAGAAACCTTGGTACTTCATGTTCACAAGCTTTGATGAGCCAACTGGTTATGCTTATGATCCCATCCTTCGGAAATGGTATGGCATTGAACTTCCCTGCATTGACGCTTCTAATTGGCTCATTGCATCATCATGTGGTTTAGTTTGCTTCATGGACAACGACAATCGAAGTGAATTATTCGTGTGCAACCCCATTACTAAAATCTATAGGCAGCTTGAGGAGCCCCCTGGTTCTGACTTTTCTGAGTATAGTGCATTGGCAATTTCAGTGAACAGAATCTCACAAAGTTATAGAGTGGCAATCGTGAAATCGAAGGAAGTGCCTGAGAACTTCTCCCAATCTGTTATTTCAATTCATATATACAACTCAGAAGATAAGACCTGGGTGACCAGTTTAACAGAGGTTTTGATAGGGTGGAGAGGTGGTGGTGAGAGTGTGATATGTAATGGGGTGCTGTATTTTTTGGTTTATTCAACTGGGGGCGGTCAACCAGAAAATCGTCATGCCCTATTTGCCTATAATATCACCAACCATTCGTCTCAGCGATCATTGGCAAGGAGCTATATTCCAATACCTTGTCCTTTAACATGTGGTCGTCTGATGAATTTGAAGGAGAAGCTTGTAATGGTCGGAGGTCTTGGTAAACTTGATCGGCCTGACATTATAAAAGGGATTGGCATCTGGGTGCTAAATGATAGGAAATGGGATGAAATTGCTCGAATGCCTCACAAATTCTTTCAAGGATTTGGAGAGTTGGATGATGTCTTTGCTAGCAGTGGTACAGATGATCTAATATATATTCAAAGCTATGGAGCCTCAGCACTTCTCACATATGACATGAACCATAAACAATGGAAATGGTCACAGAAGTGTCCAGTGACAAAAAGGTTTCCACTGCAGCTCTTCACCGGATTTTGCTTTGAACCCAGGCTTGAAATTGCTCCATAG 1218 0.4236 MAGETSWIIHYLDNATREPREFDSFLEVGEESDKEVTAVSVDSILPDDLLERILAYLPVASIFRAGCVCKRWNEIVTSKRFLWNLSHVLPQKPWYFMFTSFDEPTGYAYDPILRKWYGIELPCIDASNWLIASSCGLVCFMDNDNRSELFVCNPITKIYRQLEEPPGSDFSEYSALAISVNRISQSYRVAIVKSKEVPENFSQSVISIHIYNSEDKTWVTSLTEVLIGWRGGGESVICNGVLYFLVYSTGGGQPENRHALFAYNITNHSSQRSLARSYIPIPCPLTCGRLMNLKEKLVMVGGLGKLDRPDIIKGIGIWVLNDRKWDEIARMPHKFFQGFGELDDVFASSGTDDLIYIQSYGASALLTYDMNHKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0275 405 CDD F-box_AtFBW1-like 43 81 - -
Prci13g0275 405 Pfam F-box-like 45 84 IPR001810 GO:0005515
Prci13g0275 405 FunFam F-box/kelch-repeat protein At3g61590 family 91 389 - -
Prci13g0275 405 PANTHER F-BOX FAMILY PROTEIN 10 402 IPR045048 -
Prci13g0275 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Prci13g0275 405 Gene3D - 34 85 - -
Prci13g0275 405 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Prci13g0275 405 SUPERFAMILY Galactose oxidase, central domain 68 383 IPR011043 -
Prci13g0275 405 SUPERFAMILY F-box domain 42 146 IPR036047 GO:0005515
Prci13g0275 405 NCBIfam F-box protein interaction domain 135 339 IPR017451 -
Prci13g0275 405 Gene3D - 94 388 IPR015915 GO:0005515
Prci13g0275 405 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0275 Prci-Chr13 1847821 1850923 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0275 - - gmx:100817678 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0275 13 1847821 1850923 Prci13g0275 13 1847821 1850923 ECH