Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2461 ATGCCGGGTCTAGTTGCGGCGAAAACCCCGCCTCATACGACCCCTTTGGGAGTCTCCGTTATCGATTATTCCAATGGCGGCGAACAAAGATCTTCTTCACCCATCGTGCAGCGAAGCTTAAAGAAGGCACAGGAAAAGCTGATCACCGACGATTCCTCCCTCGACAACCCGGACCTGGGTCCATTTCTTCTGAAGCTAGCCCGCGACGCAATAGCTTCGGGTGAGAACCCGAACAAGGCGTTGGACCTTGCGATCCGGGCGTCCAAATCGTTCGAGCGCTGTTCGGGTCCGGGTCTGGAGCTTACCATGTGCTTGCACGTTGTGGCGGCTATCTACAGCAGTTTGGGGCGGTTCGGAGAGGCGATTCACGAATTGGAGCGGTCCATTGAGATTCCGGATCCTGGAAAAGGATCGGATCACGCCATGGCGAAGTTTTCCGGGTACATGCAATTAGGGGACACATATTCGATGATTGGGCAGCTCCAACGGTCTGTTAAGTGTTACAGCACAGGATTGCGGGTCCAAATGGAGGCTTTGGGAAAGTCCGACCCGAGAGTCGCAGAGACTTGCAGGTACTTAGCTGAAGCCCATGTCCAGGCTATGCAATTTGATGAGGCTGAGAACTTCTGCAAGAAGGCTCTTGAAATTCACAGGGAGCATAGCTCCCCAGCGTCCCTTCCCGAAGCAGCTGATCGGCGCCTGATGGCTCTCATATGTGATGCAAGGGGAGATTATGAATCAGCACTTGAGCACCTTGTCCTGGCCAGTGTATCAATGATTGCCAATGGACAAGACAATGAGGTTGCATCTATTGATGTTAGCATTGGCGATATTTACCTGTCACTCTGTCGTTTTGATGAGGCTGTCTTTGCCTATCAGAAAGCTCTCAGTGTGTTCAAATCCACCAGAAGCGAGAACCATGGTTCTGTGGCATTAGTATACATTCGCCTTGCTGACCTTCACTACAAGACAGGAAATTTACGAGAGTCCAAATCCTACTGTGAAAATGCCTTGAGAATATATACCAAACCTGTTCCTGGAACAACCCCTGAAGAGATTGCCAGCGGGTTAACTGAAATCTCTGCCATCTATGATGCTCTGAATGAGCCTGAAGAGGCACTGAAGCTCTTGCAGAAGGCAATGAAGTTATTGGAGGATAACCGTGGACAGTATAGGACCATTGCAGGAATTGAAGCACAAATGGCTGTGATGTTCTGCACAGTAGGGAGGTACATGGAGGCTCGGGACTCTTTTGAAAGTGCTATCACTAAGCTGAGGGCTAGTGGGGAGGGGCAATCTGCATTTTTTGGGGTTTTGTTGAACCAAATGGGGCTGGCTTGTGTGCAACTATACAAAATAGGAGAGGCAGCCAAACTTTTTGAGGAGGCAAGAGAGATATTGGAGGAGGAGTGTGGGACATATCACCTGGACACTTTAGGAGTGTATAGCAACCTTGCAGCAACATATGATGCCATGGGGAGGGTCGACGATGCCATTGAGATATTGGAGCAGACGCTAAAGGTGAGAGAAGAAAAGCTTGGAACAGCAAATCCAGATGCTGATGATGAAAAGAAAAGACTACATGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAAAAAGGGCAAATCCCTTGAAAATCTTATAGATTCTAACTTTCTAAAGATGGAGAAGGAAGGAAGGAAGAGAAGGGCTGCATTTGGTTTGAGAACTTGA 1716 0.4878 MPGLVAAKTPPHTTPLGVSVIDYSNGGEQRSSSPIVQRSLKKAQEKLITDDSSLDNPDLGPFLLKLARDAIASGENPNKALDLAIRASKSFERCSGPGLELTMCLHVVAAIYSSLGRFGEAIHELERSIEIPDPGKGSDHAMAKFSGYMQLGDTYSMIGQLQRSVKCYSTGLRVQMEALGKSDPRVAETCRYLAEAHVQAMQFDEAENFCKKALEIHREHSSPASLPEAADRRLMALICDARGDYESALEHLVLASVSMIANGQDNEVASIDVSIGDIYLSLCRFDEAVFAYQKALSVFKSTRSENHGSVALVYIRLADLHYKTGNLRESKSYCENALRIYTKPVPGTTPEEIASGLTEISAIYDALNEPEEALKLLQKAMKLLEDNRGQYRTIAGIEAQMAVMFCTVGRYMEARDSFESAITKLRASGEGQSAFFGVLLNQMGLACVQLYKIGEAAKLFEEAREILEEECGTYHLDTLGVYSNLAATYDAMGRVDDAIEILEQTLKVREEKLGTANPDADDEKKRLHELLKEAGRVRNKKGKSLENLIDSNFLKMEKEGRKRRAAFGLRT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2461 571 Gene3D Tetratricopeptide repeat domain 36 255 IPR011990 GO:0005515
Prci12g2461 571 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 552 - -
Prci12g2461 571 Pfam Tetratricopeptide repeat 268 343 - -
Prci12g2461 571 Pfam Tetratricopeptide repeat 439 511 - -
Prci12g2461 571 SUPERFAMILY TPR-like 102 517 IPR011990 GO:0005515
Prci12g2461 571 SMART tpr_5 395 428 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 145 178 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 187 220 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 354 387 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 269 302 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 479 512 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 102 135 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 437 470 IPR019734 GO:0005515
Prci12g2461 571 SMART tpr_5 311 344 IPR019734 GO:0005515
Prci12g2461 571 Pfam MalT-like TPR region 148 252 IPR041617 -
Prci12g2461 571 Coils Coil 367 387 - -
Prci12g2461 571 Gene3D Tetratricopeptide repeat domain 435 547 IPR011990 GO:0005515
Prci12g2461 571 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Prci12g2461 571 Gene3D Tetratricopeptide repeat domain 256 434 IPR011990 GO:0005515
Prci12g2461 571 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
Prci12g2461 571 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Prci12g2461 571 Coils Coil 520 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2461 Prci-Chr12 42265000 42269695 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2461 - - gmx:100794697 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2461 12 42265000 42269695 Prci12g2461 12 42265000 42269695 ECH