Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2364 ATGGCTGTCGATCACGAAGACGATATCAAGGACGAGAAGAATCCCCGCCCCCTTGACGAGGATGACATCGCTCTGCTCAAAACCTATGGTTTGGGACCTTACTCCACAAGCATTAAAAAAGTTGAAAAGGAAATCAAAGAAATGGCAAAGAAAGTCAATGACTTGTGCGGAATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCACTCCAGGTGGCAAGGTGTACAAAAATAATAAATCCAAACTCTGAAGATGCAAAATATGTAATCAATGTTAAGCAGATTGCAAAGTTTGTAGTTGGGTTGGGTGATAAAGTTTCCCCCACTGACATAGAGGAAGGAATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTAGAGGAGAAACCTGATGTGACATACAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGAGAGAAGTTGTGGAACTTCCCATGCTTCACCCTGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAAGGTGTTCTTTGCTATGGTCCACCAGGAACTGGCAAAACGCTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTCATAAGAGTTATTGGAAGTGAACTAGTTCAGAAATATGTTGGTGAGGGTGCTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGTATTGTATTTTTTGATGAAGTTGATGCAATAGGAGGTGCTAGATTTGATGATGGTGTTGGTGGGGACAATGAGGTTCAGCGGACAATGCTTGAAATTGTGAACCAACTTGATGGTTTTGATGCTCGAGGGAACATCAAGGTTTTGATGGCAACAAACAGGCCAGACACTCTAGATCCAGCACTTCTACGTCCTGGGAGATTGGATCGGAAAGTTGAATTTGGCCTCCCTGACCTTGAGAGTAGGACTCAGATATTCAGGATACACACAAGAACTATGAACTGTGAAAGGGACATCCGATTTGAACTTCTAGCTCGGCTTTGTCCAAATTCTACTGGAGCTGATATAAGGAGTGTTTGCACTGAAGCTGGTATGTATGCTATTCGTGCTCGAAGGAAGACTGTGACAGAGAAAGACTTCCTTGATGCAGTAAACAAAGTCATCAAAGGATACCAAAAGTTCAGTGCGACTCCAAAGTATATGGTCTACAACTAA 1281 0.4286 MAVDHEDDIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFRIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2364 426 Gene3D - 32 157 IPR012340 -
Prci12g2364 426 FunFam 26S protease regulatory subunit 7 33 157 - -
Prci12g2364 426 CDD RecA-like_PAN_like 166 336 - -
Prci12g2364 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
Prci12g2364 426 Gene3D - 158 337 IPR027417 -
Prci12g2364 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Prci12g2364 426 FunFam 26S protease regulatory subunit 7 158 337 - -
Prci12g2364 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Prci12g2364 426 FunFam 26S protease regulatory subunit 7 339 410 - -
Prci12g2364 426 SMART AAA_5 201 340 IPR003593 GO:0016887
Prci12g2364 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 7 412 - -
Prci12g2364 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Prci12g2364 426 Gene3D - 339 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2364 Prci-Chr12 41290276 41294733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2364 165 421 Miscellaneous Gene Families AT3G47060 41.985 6.57e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2364 K03061 - gmx:100779787 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2364 12 41290276 41294733 Prci12g2364 12 41290276 41294733 ECH